Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq53181 132 4e-26 seq4370 100 3e-16 seq31910 98.7 9e-16 seq31911 93.3 4e-14 seq23310 82.4 7e-11 >seq53181 Length=15488 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || ||| || || || || || |||||||| || ||||||||| Sbjct 5518 ATACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCG 5577 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||||||||| || | || | || || |||||||| Sbjct 5578 GCCAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGG 5637 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||||||||||||| |||| || | || | ||| || ||| || Sbjct 5638 GGAATCCCTTCCTTATCTTGAATTTTTGCCTTGA-CGTTATCGATGGTATCAGAACTTTC 5696 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| ||| || || || |||||||| ||||| ||||||||| Sbjct 5697 AACCTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCATC 5748 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||||||| || ||||| || || || ||||| || ||||| |||||| Sbjct 6202 ATCCCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCG 6261 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||||||| || || ||| | || | || ||||| || || Sbjct 6262 GCCAACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGA 6321 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || |||| | || | | | || | || | ||| || ||| ||| Sbjct 6322 GGAATTCCCTCCTTGTCCTGAA-TCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTC 6380 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| |||||||| | ||| || |||||||| ||||| || || || ||||| ||| || Sbjct 6381 GACCTCGAGAGTGATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCATACCGCCAC 6439 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| |||||||| || ||||| | || || ||||| ||||||||||||||| Sbjct 5746 ATCCCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCG 5805 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | || ||||| || || || || | |||| || ||||| || || Sbjct 5806 GCCAAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGA 5865 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || |||| | || | | | || | || | || || ||| ||| Sbjct 5866 GGGATCCCTTCCTTGTCCTGAA-TCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTC 5924 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | |||| || || || || |||||||| ||||| ||||||||| Sbjct 5925 GACTTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCATC 5976 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||||||| || ||||| || || || ||||| || || || || ||| Sbjct 5974 ATCCCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCG 6033 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||| || || || ||| | ||||| || ||||| || || Sbjct 6034 GCCAAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGA 6093 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||| |||| | || | | | || | || | || || ||| || Sbjct 6094 GGAATTCCTTCCTTATCCTGAA-TCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTC 6152 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | || | ||| || ||||| || ||||| ||||| ||||||||| Sbjct 6153 GACTTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCATC 6204 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| || |||||||||||| Sbjct 6430 ATACCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCG 6489 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||| || || |||| | || ||||| ||||| Sbjct 6490 GCAAGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGA 6549 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||| || || |||| || | ||| |||||| |||| Sbjct 6550 GGGATGCCTTCCTTGTCTTGGATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCG 6609 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||||| || || |||||||| ||||| ||||| || |||||| Sbjct 6610 ACTTCGAGAGTAATTGTCTTACCGGTTAGGGTTTTGACAAAGATCTGCATC 6660 >seq4370 Length=4242 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||| | ||| || || || ||||| ||||| || || || Sbjct 2305 ATTCCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2364 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| ||| ||||| || | ||||| | |||||||| || Sbjct 2365 GCCAGGGTGCGACCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGG 2424 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || ||||| || | || | |||||| || ||| Sbjct 2425 GGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCC 2484 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || ||||| || || || |||||||||||||| Sbjct 2485 ACCTCCAAAGTGATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || || || ||||| ||||| || |||||| Sbjct 2533 ATACCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCG 2592 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||| ||| || || || | ||||| | |||||||| || Sbjct 2593 GCCAGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGG 2652 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| ||||| || || || || | || | || | ||||| || ||| Sbjct 2653 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATCGTGTCCGAGCTCTC 2711 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || ||||| || ||||| || ||||| |||||||| Sbjct 2712 CACCTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCAT 2762 >seq31910 Length=2189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || ||||| || ||| ||| || | || Sbjct 1294 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGGCCATCTTCAAGCTGC 1353 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | |||||||| || ||||| ||||| || ||||| || || Sbjct 1354 TTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTC 1413 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| || || || |||||| |||||||||| ||||| ||||| Sbjct 1414 GCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTTTCCGGTG 1473 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| |||||||| |||||| Sbjct 1474 AGGGTTTTCACAAAAATCTGCATC 1497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || || || || || |||||||| |||||||| || || Sbjct 355 ATTCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCT 414 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| ||| || || || | ||||| | |||||||| || Sbjct 415 GCCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 474 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || || || ||| | || | ||| || || ||| Sbjct 475 GGAATGCCTTCCTTATCCTGGATCTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCC 534 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || || ||||| |||||||||||||| Sbjct 535 ACCTCCAATGTTATGGTTTTCCCAGTGAGTGTTTTAACAAAAATTTGCAT 584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || ||||||||||| ||||| || || || Sbjct 583 ATACCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCT 642 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| ||| || || || | ||||| | |||||||| || Sbjct 643 GCCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGG 702 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || ||||| ||| | || | ||| || || ||| Sbjct 703 GGAATGCCTTCCTTATCCTGGATTTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCC 762 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 763 ACCTCTAATGTTATGGTTTTTCCTGTGAGAGTTTTCACAAATATCTGCAT 812 >seq31911 Length=2244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || ||||| || ||| ||| || | || Sbjct 1303 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGCCCATCTTCAAGCTGC 1362 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| |||||||| || || || ||||| || ||||| || || Sbjct 1363 TTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCTTGGATCTTC 1422 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| || || || |||||| |||||||||| ||||| ||||| Sbjct 1423 GCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTTTCCGGTG 1482 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || ||||| |||||| Sbjct 1483 AGGGTTTTCACGAAAATCTGCATC 1506 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || ||||||||||| ||||| || || || Sbjct 592 ATGCCACCACGGAGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCT 651 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| ||| || || || | ||||| | |||||||| || Sbjct 652 GCCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGG 711 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || || | || | ||| || || ||| Sbjct 712 GGAATACCTTCCTTGTCCTGTATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCC 771 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || ||||||||||| ||||| || ||||| Sbjct 772 ACCTCTAATGTAATGGTTTTCCCAGTTAGAGTTTTCACAAATATCTGCAT 821 >seq23310 Length=1212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| | ||| || || |||||||| |||||||| || || | ||| | ||| Sbjct 722 CAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCATC 781 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || ||||| || | ||||| |||||||| || || ||||||||||| || || Sbjct 782 CTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGAATGCCTTCCTTGTC 841 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| || |||| || | |||||| || ||| ||||| | ||| | || Sbjct 842 CTGAATCTTGGTCTTGACATTATCAATGGTGTCTGAGCTCTCCACTTCCAAAGTGATGGT 901 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || || || || ||||| Sbjct 902 CTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450749710375800