Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq42083 123 3e-23 seq23310 100 3e-16 seq24190 98.7 1e-15 seq53181 91.5 2e-13 seq31911 89.7 6e-13 >seq42083 Length=68989 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || ||||||||||||||||| || |||||| ||||| || || || | ||| || | Sbjct 15143 AAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGCTAGGGTCCTG 15202 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| |||||||||||||||||||| || | |||||||| || | ||| | || |||| Sbjct 15203 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGGGATGCCCTCC 15262 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || ||| ||||| ||||| | | | || ||| || || || |||| || Sbjct 15263 TTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAACCTCCAAAGTA 15322 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || || || || ||||| || ||||| ||||| || Sbjct 15323 ATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 15363 >seq23310 Length=1212 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||||| ||| | || ||||| |||||||||||||| | Sbjct 706 TGCCACCCCTCAGTCGCAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCAG 765 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | | || || |||||||| || || || |||||||| ||||| || | | Sbjct 766 CAAGGGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAG 825 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || ||||||||| ||||| |||||| | | | ||||| |||| | Sbjct 826 GAATGCCTTCCTTGTCCTGAATCTTGGTCTTGACATTATCAATGGTGTCTGAGCTC---T 882 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| |||||||| || || |||| || || || || || ||||| Sbjct 883 CCACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||||||||| ||||| | || || || | ||||||||||| ||||| ||||| Sbjct 515 CTCTTTTTGGATATTATAGTCAGCAAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAA 574 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | || ||||||||| ||||| ||| | | Sbjct 575 AATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATT 634 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| |||| || ||||| || || |||| || || Sbjct 635 GTCAATAGTGTCTGAGCTC---TCCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTCTT 691 Query 46579 AACAAAGATTTGCAT 46593 || || || ||||| Sbjct 692 CACGAATATCTGCAT 706 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| | ||| | || || || |||||||||||||| | Sbjct 934 TGCCACCCCTCAGCCGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCAG 993 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || |||| || || || || || ||||| ||||| | |||||| || | | Sbjct 994 CAAGGGTACGACCGTCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGTG 1053 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||| ||||| |||||| | | | ||||| ||||| Sbjct 1054 GGATACCTTCCTTGTCTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCCA 1113 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | |||||||| || || || | || |||||||||||||||||| Sbjct 1114 CCTCAAGAGTGATGGTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1163 >seq24190 Length=3131 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| || |||||| ||||| ||||| || | ||| || | | || ||| Sbjct 1462 ACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGCTAGGGTCCTGCCATCCTCG 1403 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| || | |||||||| || | || | | |||||||| | Sbjct 1402 AGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 1343 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | |||||| ||||| || |||| || || || || Sbjct 1342 ATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCAACCTCCAGAGTAATTGTCTTA 1283 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || ||||| || ||||| ||||| || Sbjct 1282 CCCGTTAGGGTTTTGACGAAGATCTGCATCTT 1251 >seq53181 Length=15488 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| || ||||| | ||| |||||| || || |||||||||| | ||| | |||| Sbjct 5991 CAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTGCCGTC 6050 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | |||||| |||||||| |||||||||||||| || | || | | ||||| || Sbjct 6051 TTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCCTTATC 6110 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 | ||||| ||| | ||| | | | || || ||| || |||| ||||| | Sbjct 6111 CTGAATCTTAGCCTT-AACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTGATCG 6169 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || ||||| ||||| |||||||| Sbjct 6170 TCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 >seq31911 Length=2244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| | || || | | || || | ||||| ||||| ||| Sbjct 403 TCCTTCTGGATGTTGTAGTCAGCCAGTGTCCTGCCATCCTCCAATTGCTTACCGGCAAAT 462 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||||| ||||| |||| | | Sbjct 463 ATCAACCTCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGTATCTTAGTCTTTACATTA 522 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || || |||| ||||| |||| || ||||| || || || || |||||| Sbjct 523 TCAATGGTATCCGAGCTC---TCCACCTCCAATGTTATGGTCTTCCCAGTGAGAGTTTTA 579 Query 46580 ACAAAGATTTGCAT 46593 ||||| |||||||| Sbjct 580 ACAAAAATTTGCAT 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563670887934600