Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq23310 105 5e-18 seq4370 96.9 2e-15 seq53181 95.1 8e-15 >seq23310 Length=1212 Score = 105 bits (116), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||| |||||||| || || | ||| ||||||| | ||||| || | ||| Sbjct 516 TCTTTTTGGATATTATAGTCAGCAAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAAA 575 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || | |||||||||||| | || | |||||| ||||| || || |||| | | Sbjct 576 ATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTG 635 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||||| ||| ||||| ||||||||||| || || || || || || || | Sbjct 636 TCAATA--GTGTCTGAGCTCTCCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTCA 693 Query 39707 CGAAGATCTGCATG 39720 |||| ||||||||| Sbjct 694 CGAATATCTGCATG 707 >seq4370 Length=4242 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| |||| ||| ||| || || || |||||||| |||| ||| |||| Sbjct 3007 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTATAATCTGCCAGGGTGCGGCCATCT 3066 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | || || ||| | || || || | |||||| || | || | || || ||||| Sbjct 3067 TCAAGCTGCTTACCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 3126 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| |||| | | | ||| || | ||||||||| |||||||||||||| Sbjct 3127 TGGATTTTAGCCTTAACATTATCAATTGTATCGGAGCTTTCCACCTCCAAAGTAATTGTC 3186 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || | ||||| ||||||||||||||| Sbjct 3187 TTTCCGGTGAGGGTTTTGACGAAGATCTGCATG 3219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| || || || || || ||||||||| Sbjct 2536 CCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 2595 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || |||| ||| || ||| ||||||| || | |||||| || | ||| Sbjct 2596 AGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2655 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCAC 39671 | |||||| || || || || || | ||| | | | ||||| | ||| ||||| Sbjct 2656 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATCGTGTCCGAGCTCTCCAC 2714 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || ||||| | ||| || || || || ||||| Sbjct 2715 CTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCAT 2762 >seq53181 Length=15488 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| |||| || | ||| || |||||||| |||||||||||| Sbjct 5521 CCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCC 5580 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || ||||||||||| || ||||||| | | ||| || |||| ||| Sbjct 5581 AATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGA 5640 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| || | | | | || || | ||||| || Sbjct 5641 ATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAACC 5700 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || ||||| || | |||||| || || || ||||| Sbjct 5701 TCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | || || || | ||| | ||| || || || |||||||||||||| Sbjct 6433 CCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 6492 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | ||||| ||| |||| || | |||||||||||||| || Sbjct 6493 AGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGG 6552 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| | || || | | || ||| | || || | || || | Sbjct 6553 ATGCCTTCCTTGTCTTGGATCTTAGTCTTGACATTATCG--ATGGTATCGGAACTCTCGA 6610 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||||||||| ||||| |||| ||||| || ||||||||||| Sbjct 6611 CTTCGAGAGTAATTGTCTTACCGGTTAGGGTTTTGACAAAGATCTGCAT 6659 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||||||||||||||| | | || ||||| || |||||| |||| Sbjct 5785 TCCTTCTGGATATTATAATCGGCCAAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAG 5844 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||||| | || | ||||| ||||| | | | || | | | ||| Sbjct 5845 ATCAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTC-CTGAATCTTAGCCTTAACGTT 5903 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||| || | || || || ||||| ||||| || ||||| || | |||||| || Sbjct 5904 GTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGAC 5963 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 5964 AAATATTTGCAT 5975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346430361993215