Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq42542 138 1e-27 seq21646 111 2e-19 >seq42542 Length=7134 Score = 138 bits (152), Expect = 1e-27 Identities = 239/339 (71%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || ||||| | ||||| || || || || |||| ||| || |||||| || ||| Sbjct 4494 TCGAGAATATCTGCACGATTAGTCGCTGCAATTACAATAATGCCAGTGTTTCCTT--CAA 4437 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| |||||||| || ||||| | |||||| |||| ||| ||||| || | Sbjct 4436 AACCATCCATTTCTGTCAAGAGTTGGTTCAGAGTTTGCTCCCTTTCGTCATTGCCT--CC 4379 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 4378 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 4319 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || |||||| || |||| ||| ||||| || ||||| || || |||||| Sbjct 4318 AGGGGCATTTTCCTTTGC--CTTCTTAAAAAGATCACGAACACGAGAAGCACCAACACCA 4261 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 || |||||||| ||||| | || | ||| |||| || || || || | |||||| Sbjct 4260 ACGAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACCCCTGCTTCACC 4202 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| || || || | ||||| || |||||||| Sbjct 4201 AGCAATTGCCTTAGCCAGCAATGTCTTTCCGGTACCTGG 4163 >seq21646 Length=15599 Score = 111 bits (122), Expect = 2e-19 Identities = 252/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || ||||||||||| ||||||||||| || | ||||||||| | Sbjct 7377 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTTTCATCATTTCC---- 7432 Query 16035 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||| || ||| ||| | |||| |||| || ||||||||||||||||| || || Sbjct 7433 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCTACAGCATCAATCTCATCAATAAATACA 7490 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 16146 ||||| || || | ||| ||||| | ||||| ||| || | || || | Sbjct 7491 ATGCAAGGAGCCTTAGCCTTAGCTTTCTCAAATAAATCCC--TCACTCTAGAAGCTCCAA 7548 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||| ||||| | ||||||||| | || || | ||| | ||| || ||| | | Sbjct 7549 CACCCACAAAAAGCTCCACAAACTCTGAAGCTGCACAAGAAAAGAATGGTACACCGGCCT 7608 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| |||| |||| || | ||| || || || ||||| || || | | || Sbjct 7609 CACCAGCAACTGCTCTAGCTAAAAGGGTTTTTCCAGTACCAGGTGGTCCAACCAAAAGAC 7668 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||| ||||||||| || || || ||| | ||||| | || | ||||| | Sbjct 7669 ACCCTTTTGGAATCTTTGCACCCAAAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCAA 7728 Query 16327 CAATCTCTTCCAATTC 16342 ||| |||| |||||| Sbjct 7729 CAACTTCTTGCAATTC 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619020964935600