Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq42542 143 3e-29 seq21646 104 3e-17 seq60807 102 1e-16 seq34486 89.7 6e-13 >seq42542 Length=7134 Score = 143 bits (158), Expect = 3e-29 Identities = 238/337 (71%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 || || ||||| | ||||| ||||| || || |||| ||| || |||||| || ||| Sbjct 4494 TCGAGAATATCTGCACGATTAGTCGCTGCAATTACAATAATGCCAGTGTTTCCTT--CAA 4437 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| |||||||| |||||||| | |||||| |||| ||| ||||| || | Sbjct 4436 AACCATCCATTTCTGTCAAGAGTTGGTTCAGAGTTTGCTCCCTTTCGTCATTGCCT--CC 4379 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | |||| ||| || |||||||| ||||||| || ||||| || Sbjct 4378 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 4319 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || |||||| || | | ||| ||||| ||||| | || || |||||||| Sbjct 4318 AGGGGCATTTTCCTTTGCCTTCTTAAAAAGATCACGAACACGAGAAGCACCAACACCAAC 4259 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||||| ||||| | || | ||| |||| || || || || | |||||| | Sbjct 4258 GAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACCCCTGCTTCACCAG 4200 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| || || || | ||||| || |||||||| Sbjct 4199 CAATTGCCTTAGCCAGCAATGTCTTTCCGGTACCTGG 4163 >seq21646 Length=15599 Score = 104 bits (114), Expect = 3e-17 Identities = 192/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || |||||||| || ||||||||||| || | ||||||||| | Sbjct 7377 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTTTCATCATTTCC---- 7432 Query 9342 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| || ||| ||| | |||| |||| || ||||||||||||||||| || ||| Sbjct 7433 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCTACAGCATCAATCTCATCAATAAATACA 7490 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || | || | ||||| | ||| | || || || || ||| Sbjct 7491 ATGCAAGGAGCCTTAGCCTTAGCTTTCTCAAATAAATCCCTCACTCTAGAAGCTCCAACA 7550 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||| | ||||||||| | || || | ||| | ||| || ||| | ||| Sbjct 7551 CCCACAAAAAGCTCCACAAACTCTGAAGCTGCACAAGAAAAGAATGGTACACCGGCCTCA 7610 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| |||| || | ||| || || || ||||| || Sbjct 7611 CCAGCAACTGCTCTAGCTAAAAGGGTTTTTCCAGTACCAGG 7651 >seq60807 Length=868 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || ||||| || || ||||||||||| ||||| || | || ||| | ||| | |||| Sbjct 409 TGGGGTCTGGGAGTTCCAGCATTGAAAAGGGTAGGAGACGCATGAGTAAACCATCTTTGG 468 Query 107228 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | |||| ||| || ||| |||||||| ||| |||||| || | | Sbjct 469 GACATCAAATGATATGTTCTTATAG-CAGCTTCAATGTCATCCTTGTGGATCCCAACAGA 527 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||| ||| |||| | | | |||| || || || | || | Sbjct 528 AACCCTCATCAACATGTGTTGTGGTCTTTCAACTACTTTTCCATGGA-CCTTTAAGAGGT 586 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||| ||||||| ||||||||| || ||||| ||||||| Sbjct 587 AAGACCTCTCAAGAGTTTTGAAGCCAAAGTAATCATAATCAAAGTCCCG 635 >seq34486 Length=7597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/278 (68%), Gaps = 13/278 (5%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || || |||||||| || | ||||| | || || |||||| || || Sbjct 4068 GGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACC 4009 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||| | ||| ||||| || |||||| |||| | ||| || |||||||| || || Sbjct 4008 GGGCAATAAACCACGCTTTTTTAACCAAAAAATTGAGCAAAAGCTTCCGGAGAAAAATAT 3949 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCA 117450 ||||| || || || || |||| | |||||||||||||| ||| | ||| Sbjct 3948 TCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCC-----GTCT 3894 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 117510 | ||||| | ||||| || || ||||| || | || || | || | ||| || | | Sbjct 3893 ATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGA 3834 Query 117511 AATAAC---TGCTTCTTTTCAGATCCATCCTTAATGTA 117545 || | | ||||||| | || |||||||||||| Sbjct 3833 AAGAGCCTGTGCTTCTCGTTGGA---ATCCTTAATGTA 3799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588344672620200