Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq31911 122 6e-23 seq31910 122 6e-23 seq4370 116 2e-21 seq4542 82.4 5e-11 >seq31911 Length=2244 Score = 122 bits (134), Expect = 6e-23 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| || | ||||| |||| || ||||||||||||||| ||||| | Sbjct 821 TTCCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTG 880 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | ||| |||| || ||||| ||||| ||||| || | | ||||||||| | Sbjct 881 CAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGAGG 940 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || ||||| || ||||| || || || | || || | ||| || | Sbjct 941 GAATACCTTCCTTATCCTGTATCTTGGCCTTTAC--AT--TGTCAATGGTATCCGAGCTC 996 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | |||||||||||||| |||||||| |||||||| |||||||| Sbjct 997 TCCACCTCTAGTGTTATGGTTTTTCCGGTGAGAGTTTTCACAAATATCTGCAT 1049 Score = 109 bits (120), Expect = 4e-19 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| || | ||||| |||| || ||||||||||||||| ||||| | Sbjct 1049 TTCCTCCCCTCAATCTAAGGACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTG 1108 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | ||| |||| || ||||| ||||| ||||| || | || ||||||||| | | Sbjct 1109 CAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 1168 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || ||||| || ||||| || || || | || || | ||| || | Sbjct 1169 GAATACCTTCCTTATCCTGTATCTTGGCCTTAAC--AT--TGTCAATGGTATCCGAGCTC 1224 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||||| || || ||||| || ||||| || || |||||| Sbjct 1225 TCCACCTCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCATA 1278 >seq31910 Length=2189 Score = 122 bits (134), Expect = 6e-23 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| || | |||||||||| || ||| ||||||||||| ||||| | Sbjct 812 TTCCTCCCCTCAATCTAAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTG 871 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | ||| |||| || ||||| ||||| ||||| || | | ||||||||| | | Sbjct 872 CAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 931 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || ||||| || |||||| || || || | || || | ||| || | Sbjct 932 GAATGCCTTCCTTATCCTGAATCTTGGCCTTCAC--AT--TGTCAATTGTATCCGAGCTC 987 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | |||| |||||| || |||||||| |||||||| |||||||| Sbjct 988 TCCACCTCTAGTGTTACGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 1040 Score = 113 bits (124), Expect = 3e-20 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| || | ||||||||||| || ||| ||||||||||| ||||| | Sbjct 1040 TTCCTCCCCTCAATCTAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTG 1099 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | ||| |||| || ||||| ||||| ||||| || | | ||||||||| | | Sbjct 1100 CAAGAGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 1159 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-C 34928 | | || |||||||| |||||| || || || | || || | ||| || | Sbjct 1160 GAATACCTTCCTTGTCCTGAATCTTGGCCTTCAC--AT--TGTCAATGGTATCCGAGCTC 1215 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | |||||||| || || ||||| || ||||| || || ||||| Sbjct 1216 TCCACCTCCAATGTTATGGTCTTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1268 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| ||||| ||||| ||||| | ||| | || |||| ||| Sbjct 604 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCTTCC 663 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | | |||||||| | || | || ||||| || Sbjct 664 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 723 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948 || || ||| || || |||| || | ||| || ||| || || | |||||||| Sbjct 724 ATTTTAGCTTTCAC--AT--TATCAATGGTATCCGAGCTCTCCACCTCTAATGTTATGGT 779 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| |||||||| |||||||| |||||||| Sbjct 780 TTTTCCTGTGAGAGTTTTCACAAATATCTGCAT 812 >seq4370 Length=4242 Score = 116 bits (128), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| || | |||||||||| ||| ||| || || ||||| ||||| | Sbjct 2762 TTCCTCCCCTCAGTCTGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGG 2821 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || ||||| ||||| ||||| || | | |||||||||| | | Sbjct 2822 CAAGGGTCCGCCCATCTTCGAGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTG 2881 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | |||||||| || || || ||| || | ||||||| || | | Sbjct 2882 GAATTCCCTCCTTATCCTGGATTTTAGCTTTCAC----GTTATCGATGGTATCTGAGCTC 2937 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | || ||||| || |||||||||||||| || ||||||||||| Sbjct 2938 TCCACCTCCAAAGTGATGGTCTTCCCCGTGAGAGTCTTGACGAAGATCTGCAT 2990 >seq4542 Length=2509 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 34748 ATCATT--TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 |||||| |||||| || | ||||||||||||||||| || ||||||||| |||||| Sbjct 2110 ATCATTGTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGGGTTGATTCTTTCTGGATGTTA 2169 Query 34806 TAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCT 34863 ||||| | |||| | || |||| |||| || || || ||||| || |||| |||| Sbjct 2170 TAGTCAGCTAAAG--TACGGCCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTCTGCT 2227 Query 34864 GGTCTTGCGGCACCCCCTCCTTGTC 34888 | || | || | || || ||||| Sbjct 2228 GATCAGGAGGAATACCTTCTTTGTC 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323755836904440