Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19857 109 6e-19 seq113474 107 2e-18 seq60807 84.2 2e-11 >seq19857 Length=23048 Score = 109 bits (120), Expect = 6e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | ||||||| ||| | || | | |||||| |||||||| Sbjct 1767 ACCTCCTTGTTCCACATAACGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACC 1708 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| || || ||||||||||||| | |||| || || ||| || Sbjct 1707 ATTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGA 1648 Query 48479 AATACCTATACCACCTGCCATTTTA--GATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| || || || || ||| ||||| || || || ||||||||||||||| Sbjct 1647 AAGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCC--TTAAGGGTATCATAA 1590 Query 48537 ATTCCTTCTATACTATCATCTATCAT 48562 || ||||| || || | ||| |||| Sbjct 1589 ATGCCTTCAATGCTGTATTCTTTCAT 1564 >seq113474 Length=757 Score = 107 bits (118), Expect = 2e-18 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| ||||||| ||| | || | | |||||| ||||||||| Sbjct 167 CCTCCTTGTTCCACATAAGGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACCA 226 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| | |||| || || ||| ||| Sbjct 227 TTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAA 286 Query 48480 ATACCTATACCACCTGC-CATTT-TAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| || || || || |||| ||||| |||||| |||||||||||||||| Sbjct 287 AGACCAATCCCTCCAGCTGATTTGCTGATAT--CAGCACATTCCTTAAGGGTATCATAAA 344 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 | ||||| || || || ||| |||| Sbjct 345 TGCCTTCAATGCTGTCTTCTTTCAT 369 >seq60807 Length=868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 48381 GCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCC 48440 ||||| | ||| | || | | |||||| ||||||||||| ||| | ||||| || || Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTGCCATTTGTACCT 68 Query 48441 GAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC-CAT 48499 ||||||||||||| | |||| || || ||| |||| ||| || || || || || Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 128 Query 48500 TT-TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTA 48558 || ||||| |||||| ||||| ||||||||||| || | || || || ||| Sbjct 129 TTGCTGATAT--CAGCACATTCCTTAAGAGTATCATAAATGCCCCCAATGCTGTCTTCTT 186 Query 48559 TCAT 48562 |||| Sbjct 187 TCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560549966902200