Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq34486 123 3e-23 >seq34486 Length=7597 Score = 123 bits (136), Expect = 3e-23 Identities = 393/600 (66%), Gaps = 11/600 (2%) Strand=Plus/Minus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 ||| || ||||| |||||||| | ||| || || || ||||| || || || ||||| Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAA 37290 ||| || |||| |||||| | ||||| | |||||| |||| ||||||| | || || | Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGA 3956 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || || || ||||| || || || || | ||| |||| | | | | | Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGAT----TCTGAG 3900 Query 37351 CAGAA-ATCCAtttttttGTCCAATCTGCCTTTAATTTA-ACACATTCAATTGTTTCAAT 37408 | | ||||||| | ||| | || |||| ||| || || || || || || Sbjct 3899 CCGTCTATCCATTGGAGGGCCCACT-TGGCTTTCTTTTCCACGCAAGGGATGGTCTCGAT 3841 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| | ||||| || || || | ||| | || || || || | || | ||| Sbjct 3840 TGCGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACT 3781 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 |||||| || ||||||||||| || || ||||| ||||||||||| ||| | || || Sbjct 3780 ATACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTC 3721 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 || | || || || || | || | || | || || ||| || ||||| Sbjct 3720 GGAAACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGA 3661 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 ||| |||||||| |||||||| | | ||||| |||| |||||| | | ||||| Sbjct 3660 AGCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTC 3601 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | || |||| || | ||| ||||| || | ||||| || ||| || Sbjct 3600 CCACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGC 3541 Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATCAG 37767 || |||||| |||||| ||| | ||| ||||| || | |||| |||||||||| Sbjct 3540 CTTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACA-TACAGAATCTATCAG 3482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590674194454200