Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq53181 98.7 8e-16 seq31911 93.3 3e-14 seq29924 86.0 5e-12 seq31910 84.2 2e-11 seq4370 82.4 6e-11 >seq53181 Length=15488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || || | || | || || ||| ||| || ||||| |||||||||| Sbjct 5291 CGCCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG 5350 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || || | ||||| || ||||| || || | ||| ||||||| || Sbjct 5351 CAAGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGG 5410 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||||||||| |||||| || ||| | | | | ||||| ||| | Sbjct 5411 GAATCCCCTCCTTGTCCTGAATCTTGGACTTCACATTATCTATGGTGTCTGAGCTCTCTA 5470 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | ||||| || || || ||||| || || |||||||||||||| Sbjct 5471 CTTCAAGTGTAATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 5519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| || | ||| || || ||| || |||||||||||||| | | ||| Sbjct 6214 AGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAACGTTCTG 6273 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| ||||||||||| || || |||| ||| ||||| | |||| |||||| Sbjct 6274 CCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCC 6333 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||| ||| ||||| | || Sbjct 6334 TTGTCCTGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTG 6393 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | ||||| || || |||||||| Sbjct 6394 ATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | || | ||| || ||| ||| || |||||||| ||||| | Sbjct 6433 CCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 6492 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | ||| |||||||||||||| || ||||| ||||||| || Sbjct 6493 AGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGG 6552 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | | || || ||| || Sbjct 6553 ATGCCTTCCTTGTCTTGGATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCGACT 6612 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| || || || || | ||||| ||||| ||||||||| Sbjct 6613 TCGAGAGTAATTGTCTTACCGGTTAGGGTTTTGACAAAGATCTGCATC 6660 >seq31911 Length=2244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| |||| || | | | || ||||| ||||||||||||||| Sbjct 403 TCCTTCTGGATGTTGTAGTCAGCCAGTGTCCTGCCATCCTCCAATTGCTTACCGGCAAAT 462 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || || | ||||| ||||||||||| ||||| |||||| | Sbjct 463 ATCAACCTCTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGTATCTTAGTCTTTACATTA 522 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| || || || || || || | |||||| ||| Sbjct 523 TCAATGGTATCCGAGCTCTCCACCTCCAATGTTATGGTCTTCCCAGTGAGAGTTTTAACA 582 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 583 AAAATTTGCAT 593 >seq29924 Length=2446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9088 ATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAAC 9147 |||| ||| ||||||||||| || || || |||| || |||||||| ||||| Sbjct 1625 ATTAGTTGTGCAATCCTGTCGCCGGCTTTGACTTCAAAATCCACATCGGAATGGTTGAAT 1684 Query 9148 AGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATG 9207 || | ||| |||||| ||| ||||| || |||||||||| || ||||| || || || Sbjct 1685 AGAATCACCCCCACGGGACCTCTGTAGTCTGCATCGATCACTCCGGCACCTACATCAATT 1744 Query 9208 AAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 | ||||| ||| || ||||| | ||||| Sbjct 1745 GAATGCTTCCACGCCAGCCCAGATCTTGGCGC 1776 >seq31910 Length=2189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || || || |||||||||| || | || Sbjct 1279 AGACGAAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCGAGGGTACGG 1338 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| |||| | ||| || || | ||||| || ||| Sbjct 1339 CCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCTTCC 1398 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||| | ||| Sbjct 1399 TTGTCTTGGATCTTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTA 1458 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||||||| || | ||||| ||||||||||||||| Sbjct 1459 ATTGTTTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 1497 >seq4370 Length=4242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || ||||| |||| || | ||| Sbjct 2317 AGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGA 2376 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| |||||||| |||| | ||| || || | ||||| ||| ||| Sbjct 2377 CCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 2436 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || || ||| | | | ||||| ||||||||||| || Sbjct 2437 TTATCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAAGTG 2496 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||| ||||| Sbjct 2497 ATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379907598894165