Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq12275 107 4e-18 >seq12275 Length=3788 Score = 107 bits (118), Expect = 4e-18 Identities = 311/468 (66%), Gaps = 18/468 (4%) Strand=Plus/Plus Query 150314 AAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATTC-TTT 150371 || ||||||||| ||||||| | || |||| || || || | ||||| || ||| Sbjct 915 AAGCTTGATCCAGTAATTGGAAGAGATGATGAAATTAGAAGAGTTG--TCAGAATCCTTT 972 Query 150372 CTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAA 150431 || | | |||||| || ||| || | |||| || || ||||| ||||||||| | Sbjct 973 CTAGAAGAACCAAGAACAATCCTGTTCTGATTGGAGAGCCTGGTGTGGGTAAAACAGCAG 1032 Query 150432 TCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC-AG--ATTCTATGAAAG 150488 | ||||| |||||||| || | || | | || |||||||| || ||| || | Sbjct 1033 TTGTTGAAGGATTAGCTCAGAGAATTGTTGCAGGGGATGTTCCTAGCAATT---TGGCTG 1089 Query 150489 ATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTG 150548 |||| | || | ||| | ||||| ||||| | ||||||| | || || | |||| Sbjct 1090 ATGTGAGGCTAATTGCGTTGGACATGGGAGCATTAATTGCTGGTGCAAAATACAGAGGTG 1149 Query 150549 AATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATG---ATGTTA 150605 |||| ||||| | | | | | || ||||| | ||||| || | | |||| Sbjct 1150 AATTTGAAGAGAGACTGAAAGCTGTACTCAAAGAAGTTGAAGAAGCTGAAGGAAAAGTTA 1209 Query 150606 TTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTT 150665 |||| ||||| |||||||| ||| | || | ||||||||| |||| || || Sbjct 1210 TTCTTTTCATTGATGAAATTCATCTTGTTCTTGGTGCTGGTCGAACTGAAGGG---TCAA 1266 Query 150666 TGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGT 150724 ||||| ||| |||| ||||| || || | ||| || | | ||| || ||| Sbjct 1267 TGGATGCTGCAAATCTGTTCAAACCAATGCTTGCTAGAGGTCAATTGAGGTGT-ATTGGT 1325 Query 150725 GCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCA 150772 || || || | ||||| ||||| ||| | | ||||||||||| ||| Sbjct 1326 GCTACCACTTTGGATGAGTATCGAAAATATGTCGAAAAAGATGCTGCA 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144328354563790