Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq34486 96.9 6e-15 >seq34486 Length=7597 Score = 96.9 bits (106), Expect = 6e-15 Identities = 298/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || |||||||| || || ||||| || || |||||||| || | | Sbjct 3638 ACGTTCTTGCCTTCTTTGCCGCTTCAGATGGCATTGTTCTGGAGAATCTCGCCGGTCGTT 3697 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATC 25713 ||| | ||| || ||| |||||| ||| |||||| ||||| || || |||||| Sbjct 3698 TCATGAAGGAGGTCCAGGTTTCCGAGGCCC-GTGCTTTCTATGGTTTTCAAATAGCCATC 3756 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || ||| | ||||| ||| ||||| | || ||| || |||||||||| || | Sbjct 3757 GAGAATATTCACTCCGAGATGTAT---AGTCTCCTGTTGGAGACGTACATTAAGGATTCC 3813 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| | |||| ||| || |||||| ||| || || | | | ||| || Sbjct 3814 AACGAGAAGCACAGGCTCTTTCACGCAATCGAGACCATCCCTTGCGTGGAAAAGAAAGCC 3873 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||||| | | ||||| || || |||| || || |||||| |||| || Sbjct 3874 AAGTGGGCCCTCCAATGGATAGACGGCTCAGAATCCTTCGC----CGAGCGTTTGGTTGC 3929 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT-CGTTTGCGGCCATCTTCTGGCTCA 25948 || ||| || ||||| || |||||| ||| | ||||| | || || ||| | | Sbjct 3930 TTTCGCTTGCGTTGAGGGAATATTTTTCTCCGGAAGCTTTTGCT-CAATTTTTTGGTTAA 3988 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || ||||||| | ||| || |||||| | || |||||||||| Sbjct 3989 AAAAGCGTGGTTTATTGCCCGGTTTAACCTTCTCGAACGAGTTGATTTCGAGGGACGAGG 4048 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| || | || ||||||||| | ||||||| Sbjct 4049 GTCTTCATTGTGACTTTGCCTGCTTACTCTACA 4081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926268939211200