Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq53181 98.7 8e-16 seq4542 87.8 2e-12 >seq53181 Length=15488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || ||||| || ||||| || ||| ||| Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| || || || || | ||| || ||| Sbjct 5687 GATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAA 5628 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| ||||| || ||||||||||| || ||| |||||||||||||| Sbjct 5627 CAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAAC 5568 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || || || || ||| |||| Sbjct 5567 ATACAAAAGGAGTCCACCCTTCACCTGGT 5539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| |||| ||||| || || || ||| || |||| Sbjct 6431 ATGCAGATCTTCGTTAAAACCCTAACCGGTAAGACGATCACTCTCGAGGTCGAGAGTTCA 6372 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || ||||| |||||| | || ||||| Sbjct 6371 GATACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 6312 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||||||||| || || || ||||||||||| | ||| |||||||||| || Sbjct 6311 CAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGATTACAAT 6252 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || ||||| || || | || || || | || || ||||| Sbjct 6251 ATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCTCCGCGGTGGGAT 6202 >seq4542 Length=2509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || ||||| ||||||||||| ||||| || || ||||||||| Sbjct 2252 GACAAAGAAGGTATTCCTCCTGATCAGCAGAGACTTATTTTTGCTGGTAAGCAATTGGAA 2193 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| ||| | || || |||||||| || |||||||| || || ||| |||| || Sbjct 2192 GATGGCCGTACTTTAGCTGACTATAACATCCAGAAAGAATCAACCCTTCACTTGGTTTTG 2133 Query 28767 AGATTACGAGGAGGGATAATAAT 28789 || | ||||||| | ||| || Sbjct 2132 AGGCTTAGAGGAGGAACAATGAT 2110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424254565908045