Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq60807 102 1e-16 seq34486 89.7 6e-13 seq21646 86.0 7e-12 >seq60807 Length=868 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||||| || ||||||||| ||||||| ||||||| | || || | || | Sbjct 635 CGGGACTTTGATTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCTTACCTCTTAAAG 576 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || |||| | | | |||| ||||| ||||||| ||| |||| | | || || Sbjct 575 G-TCCATGGAAAAGTAGTTGAAAGACCACAACACATGTTGATGAGGGTTTCTGTTGGGAT 517 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 75305 |||| ||| |||||||| ||| || ||| |||| | |||||||||| | || Sbjct 516 CCACAAGGATGACATTGAAGCTG-CTATAAGAACATATCATTTGATGTCCCAAAGATGGT 458 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | | ||| || | || ||||| ||||||||||| || || ||||| || Sbjct 457 TTACTCATGCGTCTCCTACCCTTTTCAATGCTGGAACTCCCAGACCCCA 409 >seq34486 Length=7597 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/278 (68%), Gaps = 13/278 (5%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCA---GTTATTTGAAGCCATCCAAACTGTACCA 65013 |||||||||||| || | ||||||| | | ||| | || ||| | || | || Sbjct 3799 TACATTAAGGAT---TCCAACGAGAAGCACAGGCTCTTTCACGCAATCGAGACCATCCCT 3855 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCT 65071 || | || ||||| || || ||||| | ||||| | ||| | ||| |||| Sbjct 3856 TGCGTGGAAAAGAAAGCCAAGTGGGCCCTCCAATGGATAGAC-----GGCTCAGAATCCT 3910 Query 65072 TCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCT 65131 |||||||||| | |||| || || || || ||||| || || |||||||| || | Sbjct 3911 TCGCCGAGCGTTTGGTTGCTTTCGCTTGCGTTGAGGGAATATTTTTCTCCGGAAGCTTTT 3970 Query 65132 GCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAAC 65191 || | |||| |||||| || ||||| ||| | |||| || || |||||| || || Sbjct 3971 GCTCAATTTTTTGGTTAAAAAAGCGTGGTTTATTGCCCGGTTTAACCTTCTCGAACGAGT 4030 Query 65192 TTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | ||||| | || |||||||| || || |||||| Sbjct 4031 TGATTTCGAGGGACGAGGGTCTTCATTGTGACTTTGCC 4068 >seq21646 Length=15599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/281 (67%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| ||||| ||||| | || |||| | || ||||| | ||| |||||| Sbjct 7651 CCTGGTACTGGAAAAACCCTTTTAGCTAGAGCAGTTGCTGGTGAGGCCGGTGTACCATTC 7592 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | || | || || | ||||||||| | ||||| ||||| || || || || Sbjct 7591 TTTTCTTGTGCAGCTTCAGAGTTTGTGGAGCTTTTTGTGGGTGTTGGAGCTTCTAGAGTG 7532 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | || | || || || ||||| || |||||||||||| Sbjct 7531 AGGGATTTATTTGAGAAAGCTAAGGCTAAGGCTCCTTGCATTGTATTTATTGATGAGATT 7472 Query 175495 GATGCGGTGGGCAAGCAA-----CGCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAGA 175548 ||||| || || | |||| |||| || ||| ||| | |||||| || ||| Sbjct 7471 GATGCTGTAGGAAGGCAAAGAGGAGCAGGGCTTGGAGGT------GGAAATGATGAAAGA 7418 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || ||||| |||||||| || | || || |||||||| || Sbjct 7417 GAGCAAACTATTAATCAGCTTTTGACTGAAATGGATGGTTT 7377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594915200642400