Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq53181 140 6e-28 seq4370 107 3e-18 seq42083 105 1e-17 seq23310 100 5e-16 >seq53181 Length=15488 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || ||||| || | || | ||| || || ||||| ||| Sbjct 5518 ATACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCG 5577 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| || || ||||||||||| |||||||| | ||||||||| || || Sbjct 5578 GCCAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGG 5637 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| ||||| | || | || || ||||| ||| ||| Sbjct 5638 GGAATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCA 5697 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || |||||||| || ||||| |||||||||||||| Sbjct 5698 ACCTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| || |||| ||| || |||||||| |||| || ||||| || || Sbjct 5767 ACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCCAAGGTTCTCCCGTCTTCC 5826 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || |||||||| || | | ||| ||||||||||| || ||||| || || || Sbjct 5827 AACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCCTGA 5886 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || || ||||| ||| ||| ||||| | || ||||| ||| Sbjct 5887 ATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATAGTCTTA 5946 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| |||||||||||||| Sbjct 5947 CCTGTGAGAGTTTTGACAAATATTTGCAT 5975 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||||| || ||||| || || Sbjct 5995 ACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCTGCCGTCTTCC 6054 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || || ||||| || || || | ||| ||||||||||| |||||||| ||||| || Sbjct 6055 AACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 6114 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || |||||||| ||| || ||||| | || || || ||| Sbjct 6115 ATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGACTTCCAAGGTGATCGTCTTA 6174 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| |||||||||||||| Sbjct 6175 CCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| || |||| |||||||| || || Sbjct 6223 ACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAACGTTCTGCCGTCTTCC 6282 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||| || ||||| || || | |||||| ||||||||||| ||||| || || || || Sbjct 6283 AATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGA 6342 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || || ||||| ||| ||| || || ||||| || || ||| Sbjct 6343 ATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGACCTCGAGAGTGATCGTCTTA 6402 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || ||||| Sbjct 6403 CCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 >seq4370 Length=4242 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193122 GTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATA 193181 || ||| | || ||||| | | ||||| |||| ||| | || | ||| || || Sbjct 2296 GTCATTCAAATTCCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATG 2355 Query 193182 TTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 || ||||| | | || | | ||| || | ||| |||||||||||||| || ||||| Sbjct 2356 TTGTAGTCAGCCAGGGTGCGACCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGC 2415 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 || || || || || ||||| ||||| || ||||||| || | ||| ||| || || Sbjct 2416 TGGTCTGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCT 2475 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||| || || | ||| ||||| ||||| || || || || ||||| |||||||| Sbjct 2476 GAGCTCTCCACCTCCAAAGTGATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || || || || || ||||| ||||| ||||| || ||||| || Sbjct 3291 ATCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTT 3350 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | || | ||| || ||||| || ||| || || ||||| || Sbjct 3351 ATCTTGGATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCGACCTCGAGAGTAAT 3410 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || |||||||| ||||||||||| Sbjct 3411 GGTTTTTCCGGTGAGGGTTTTTACGAATATTTGCAT 3446 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| || | ||| | ||| || || || Sbjct 2526 AATTTGCATACCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTT 2585 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | || | | || || | ||| || ||||||||||| || ||||| || Sbjct 2586 GTAATCGGCCAGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTG 2645 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| ||||| || || |||| || | || ||| || || || Sbjct 2646 GTCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCCGA 2705 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || | ||| ||||| || || || || || || ||||||||||||||| Sbjct 2706 GCTCTCCACCTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCATT 2763 >seq42083 Length=68989 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | ||| || | ||||||||||| || | ||| || || ||||| || | Sbjct 15133 ACCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGC 15192 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || || || || | || || ||||| || || | | ||| ||||| || || Sbjct 15193 TAGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGG 15252 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || ||||| ||||| || | || | ||| ||| |||||||| |||||||| Sbjct 15253 GATGCCCTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAAC 15312 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | ||| || || ||||| ||||| ||||| || || || ||||| || Sbjct 15313 CTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 15363 >seq23310 Length=1212 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||||| ||||| || || || | || | |||||| ||||||||||| | Sbjct 479 ACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATATTATAGTCAGC 538 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||| |||||| | ||||| || || ||||| | | ||| ||||| ||||| Sbjct 539 AAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGG 598 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| || | ||| |||||| || || ||| || Sbjct 599 AATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCTGAGCTCTCCAC 658 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| | ||| || || || || || | || || || ||||| ||||| Sbjct 659 TTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTCACGAATATCTGCAT 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897159489663600