Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq53181 113 7e-20 seq4370 96.9 5e-15 seq31911 95.1 2e-14 seq31910 84.2 3e-11 >seq53181 Length=15488 Score = 113 bits (124), Expect = 7e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | || || || || || || || ||||||||| |||| Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||| || || ||||| ||||| || ||||| || || Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 6084 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||||||||| | ||||| ||||||||| | || || || Sbjct 6083 CAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAAC 6024 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| | || |||||| | || || || Sbjct 6023 ATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAG 5989 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | || || || |||||||| || |||||||| |||| Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || ||| || || || || ||||| || ||||| || || Sbjct 5915 GATACAATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCTGATCAG 5856 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | |||||| |||||| | ||||| ||||| || | ||||||||| Sbjct 5855 CAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTATAAT 5796 Query 156003 AT 156004 || Sbjct 5795 AT 5794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| ||||||| | || || || || ||||| | || || ||| |||| Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || ||||| |||||||| ||||| || || || || ||| Sbjct 5687 GATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAA 5628 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| || || || | || || |||| || | |||||||| Sbjct 5627 CAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAAC 5568 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 ||| || ||| | || ||||| Sbjct 5567 ATACAAAAGGAGTCCACCCTTCA 5545 >seq4370 Length=4242 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || || | || || || |||||||| || || || || || Sbjct 2763 AATGCAAATATTTGTCAAGACTCTCACGGGCAAGACTATTACTTTGGAGGTGGAGAGCTC 2704 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||||| || || || ||||| |||||||| || ||||| || Sbjct 2703 GGACACGATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCA 2644 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||||| |||||||||||| || ||||| Sbjct 2643 GCAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGA 2608 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || ||||| || ||||| || || || ||| || Sbjct 3218 ATGCAGATCTTCGTCAAAACCCTCACCGGAAAGACAATTACTTTGGAGGTGGAAAGCTCC 3159 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| || || || || || || || ||||| || Sbjct 3158 GATACAATTGATAATGTTAAGGCTAAAATCCAGGACAAGGAGGGAATCCCACCAGACCAG 3099 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||||||||||| |||||| | | || | |||||||||| Sbjct 3098 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACCCTGGCAGATTATAAC 3039 Query 156003 AT 156004 || Sbjct 3038 AT 3037 >seq31911 Length=2244 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | ||||| | ||||| ||||| ||||||||||| || || || Sbjct 822 AATGCAGATATTTGTGAAAACTCTAACTGGGAAAACCATTACATTAGAGGTGGAGAGCTC 763 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || ||||| || || ||||| || || ||||| || Sbjct 762 GGATACCATTGACAATGTGAAGGCCAAGATACAGGACAAGGAAGGTATTCCCCCAGACCA 703 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||| || |||||| Sbjct 702 GCAGAGGTTGATCTTTGCTGGCAAGCAACTGGAAGAT 666 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || |||||||| ||||| | || ||||| ||| Sbjct 1505 ATGCAGATTTTCGTGAAAACCCTCACCGGAAAAACAATTACTCTCGAGGTCGAGAGCTCT 1446 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || ||||| || ||||| || || ||||| || Sbjct 1445 GATACGATAGACAATGTTAAGGCGAAGATCCAAGACAAGGAAGGGATCCCCCCAGACCAG 1386 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| | ||| ||||||||||| |||||| Sbjct 1385 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 1350 >seq31910 Length=2189 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || |||||||| ||||| | || ||||| ||| Sbjct 1496 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTCGAGGTCGAGAGCTCT 1437 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || ||||| || ||||| || || ||||| || Sbjct 1436 GATACGATAGACAATGTTAAGGCGAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCAG 1377 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| |||||| Sbjct 1376 CAGAGGTTGATCTTTGCTGGTAAGCAGCTTGAAGAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729842381718000