Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq53181 140 6e-28 seq23310 114 2e-20 seq31910 102 1e-16 seq31911 96.9 6e-15 seq4370 96.9 6e-15 seq21658 89.7 9e-13 >seq53181 Length=15488 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | || | || | ||| || || |||||||| Sbjct 5518 ATACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCG 5577 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | |||| |||| ||||||||||| ||||||||||| | |||||||||||| || Sbjct 5578 GCCAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGG 5637 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| || || ||| || ||||| || ||| Sbjct 5638 GGAATCCCTTCCTTATCTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCA 5697 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || ||||| || | ||||||| ||||| ||||| Sbjct 5698 ACCTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||||| | || | ||| | || | ||| || |||||||||||| Sbjct 6430 ATACCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCG 6489 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | |||||||| ||||| || | | ||| || || || Sbjct 6490 GCAAGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGA 6549 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| | || |||||| || ||||| || || Sbjct 6550 GGGATGCCTTCCTTGTCTTGGATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCG 6609 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| |||||||| || ||||| |||| ||||| | || |||||||| ||| Sbjct 6610 ACTTCGAGAGTAATTGTCTTACCGGTTAGGGTTTTGACAAAGATCTGCATCTTA 6663 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | || | || | || | ||| || ||| || ||||| | Sbjct 5293 CCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAGCA 5352 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | ||| || ||||||||||| | ||||| || || || || Sbjct 5353 AGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGGGA 5412 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || || || || |||||| ||| || ||||| |||||| Sbjct 5413 ATCCCCTCCTTGTCCTGAATCTTGGACTTCACATTATCTATGGTGTCTGAGCTCTCTACT 5472 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || ||||| ||||| || | || |||||||| Sbjct 5473 TCAAGTGTAATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 5519 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || | |||||| |||| ||| || ||||||||||| Sbjct 5746 ATCCCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCG 5805 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| ||||| || || || ||||| || | | ||| || ||||| Sbjct 5806 GCCAAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGA 5865 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| || || || || ||||| || || Sbjct 5866 GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCG 5925 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| || ||||| || | ||||| | ||||| ||||| Sbjct 5926 ACTTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975 >seq23310 Length=1212 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | |||||||| | ||| | ||||| ||||| || || Sbjct 933 ATGCCACCCCTCAGCCGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCA 992 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| |||| |||||||||||| ||||| || ||||| || || ||| Sbjct 993 GCAAGGGTACGACCGTCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGT 1052 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| || || ||||| ||| Sbjct 1053 GGGATACCTTCCTTGTCTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCC 1112 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| ||||| || || ||||| || |||| || || |||||| Sbjct 1113 ACCTCAAGAGTGATGGTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1163 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| || || | || | || | || | |||||| |||||||| || | Sbjct 479 ACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATATTATAGTCAGC 538 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | |||| | || || | ||||| ||||| ||||| | | ||| || || || || Sbjct 539 AAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGG 598 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || ||||| ||||| ||||| || || Sbjct 599 AATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCTGAGCTCTCCAC 658 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||||||||| || ||||| ||||| || | |||||||||||| Sbjct 659 TTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTCACGAATATCTGCAT 706 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || ||||| | || ||||| | ||| | || || ||||| || || Sbjct 705 ATGCCACCCCTCAGTCGCAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCA 764 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || | || || || || Sbjct 765 GC-AAGGGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGG 823 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || || || | || |||||| || || ||||| || Sbjct 824 AGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTGACATTATCAATGGTGTCTGAGCTCTC 883 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||| |||||||| || || || | |||||||||||| Sbjct 884 CACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 >seq31910 Length=2189 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || |||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 658 TCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCTTCCTTA 717 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| ||| |||||| || ||||| || || || |||| || ||| Sbjct 718 TCCTGGATTTTAGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCTAATGTTATG 777 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || | ||||| | |||||||||||| Sbjct 778 GTTTTTCCTGTGAGAGTTTTCACAAATATCTGCATT 813 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || || ||||| ||||| || || || ||||| || ||||| || Sbjct 1351 TGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATC 1410 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| ||| ||||| || || || || |||||||| ||||| || Sbjct 1411 TTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTTTCCG 1470 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || |||||||| Sbjct 1471 GTGAGGGTTTTCACAAAAATCTGCAT 1496 >seq31911 Length=2244 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || |||||||| || || ||||| ||||| || || || ||||| || Sbjct 667 TCTTCCAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTG 726 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| || || ||||| || ||||| || || || |||| |||||| Sbjct 727 TCCTGTATCTTGGCCTTCACATTGTCAATGGTATCCGAGCTCTCCACCTCTAATGTAATG 786 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||||| ||||| | |||||||||||| Sbjct 787 GTTTTCCCAGTTAGAGTTTTCACAAATATCTGCATT 822 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || |||||||| ||||| || || || ||||| || ||||| || Sbjct 1360 TGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATCCCTTCCTTGTCTTGGATC 1419 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| ||| ||||| || || || || |||||||| ||||| || Sbjct 1420 TTCGCCTTAACATTGTCTATCGTATCAGAGCTCTCGACCTCGAGAGTAATTGTTTTTCCG 1479 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | ||| |||||||| Sbjct 1480 GTGAGGGTTTTCACGAAAATCTGCAT 1505 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | || | ||||| ||| || || |||| | | ||| | || || Sbjct 841 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCA 900 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | || || |||||||| || || ||||| ||||| | || || ||||| ||||| ||| Sbjct 901 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGAGGGAATACCTTCCTTATCCTGT 960 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || |||||||| || ||||| || || || ||||| || |||||||| Sbjct 961 ATCTTGGCCTTTACATTGTCAATGGTATCCGAGCTCTCCACCTCTAGTGTTATGGTTTTT 1020 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||| | |||||||||||| Sbjct 1021 CCGGTGAGAGTTTTCACAAATATCTGCATT 1050 >seq4370 Length=4242 Score = 96.9 bits (106), Expect = 6e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||||| || || || ||||| || || || || || ||||| ||| Sbjct 3292 TCTTCAAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTA 3351 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || |||||| || ||||| || || || || ||||||||| Sbjct 3352 TCTTGGATCTTTGCCTTAACATTATCGATGGTATCCGAGCTCTCGACCTCGAGAGTAATG 3411 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAAA 172082 ||||| || || | ||||| | |||||| ||||| | | | ||||| Sbjct 3412 GTTTTTCCGGTGAGGGTTTTTACGAATATTTGCATCTGTTAAGAAAAA 3459 >seq21658 Length=30823 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| || ||| | || |||||| |||||||| || || || || ||| Sbjct 22257 CCTTCTTTGTCTTGAATCTTAGTCTTGACATTATCAATAGTATCAGATGACTCAACCTCT 22316 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| || || |||| ||||||| ||| ||||||||||| Sbjct 22317 AGGGTTATGGTCTTTCCGGTTAGGGTTTTAACGAAGATCTGCATTTT 22363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902625888159000