Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03]
221,855 sequences; 236,770,010 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq53181 93.3 3e-14
>seq53181
Length=15488
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 110269 TAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCC 110328
||| ||||| || ||||||||||| ||||||| || || ||||| ||||| |||
Sbjct 6663 TAAGATGCAGATCTTTGTCAAAACCCTAACCGGTAAGACAATTACTCTCGAAGTCGAGAG 6604
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
| |||||| ||| | || || ||||| ||||| |||||| | || |||
Sbjct 6603 TTCCGATACCATCGATAATGTCAAGACTAAGATCCAAGACAAGGAAGGCATCCCTCCGGA 6544
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || | || || | ||| ||||||||||| ||||| | | | ||| | || |||||
Sbjct 6543 TCAGCAGCGTCTCATATTTGCCGGTAAACAGCTTGAGGACGGCCGTACACTTGCCGATTA 6484
Query 110449 CAACATTCAAAAAGAATCTAC 110469
|| ||||| || || || ||
Sbjct 6483 TAATATTCAGAAGGAGTCCAC 6463
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||||||||||||||||||| | || || || || |||||| | ||| ||| |
Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || |||||| ||||| ||||| | || |||||
Sbjct 5915 GATACAATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCTGATCAG 5856
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||| || || ||| |||| || | ||||| |||| ||||| ||
Sbjct 5855 CAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTATAAT 5796
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || ||||| || || | || || || || || || ||
Sbjct 5795 ATCCAGAAGGAGTCTACCTTACATCTCGTCTTGAGGCTTCGCGGTGG 5749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411725335014515
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |