Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq53181 105 5e-18 seq31910 86.0 5e-12 >seq53181 Length=15488 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||| | ||||| || || ||||| | || || | Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||| ||| ||||| ||||| | ||| ||| || Sbjct 5687 GATACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGGACCAA 5628 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||||| ||| || ||||| ||||||||| |||| |||| || || ||| Sbjct 5627 CAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATTATAAC 5568 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||||||||||| || | ||| ||||| || Sbjct 5567 ATACAAAAGGAGTCCACCCTTCACCTGGTGCTG 5535 Score = 100 bits (110), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||||||||| | || || || || || ||| | ||| || | Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | || || |||||| ||||| ||||| | || |||||| Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 6084 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || ||||| ||| |||| |||| || ||| |||| ||||||||| Sbjct 6083 CAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAAC 6024 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 ||||| ||||||||||| | || | || ||||| | || || || || |||| Sbjct 6023 ATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCTCCGCGGTGG----GATGCAAAT 5968 Query 107796 ATTTGT 107801 |||||| Sbjct 5967 ATTTGT 5962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 175/255 (69%), Gaps = 7/255 (3%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||| | ||||| || || |||||| | ||| ||| | Sbjct 5975 ATGCAAATATTTGTCAAAACTCTCACAGGTAAGACTATTACCTTGGAAGTCGAGAGTTCT 5916 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || ||||| | || |||||| Sbjct 5915 GATACAATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCTGATCAG 5856 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||| |||| |||| | ||| |||| || || || Sbjct 5855 CAGCGCCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGGAGAACCTTGGCCGATTATAAT 5796 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || || ||||||||||| || || | || ||||| | || || || || |||| Sbjct 5795 ATCCAGAAGGAGTCTACCTTACATCTCGTCTTGAGGCTTCGCGGTGG----GATGCAAAT 5740 Query 107796 ATTTGTATTTAAAAC 107810 ||||| ||||||| Sbjct 5739 ATTTG---TTAAAAC 5728 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 ||| ||||| || ||||||||||| |||| || || || ||||| ||||| ||| Sbjct 6663 TAAGATGCAGATCTTTGTCAAAACCCTAACCGGTAAGACAATTACTCTCGAAGTCGAGAG 6604 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | |||||| ||| | || || ||||| || || |||||| | || ||| Sbjct 6603 TTCCGATACCATCGATAATGTCAAGACTAAGATCCAAGACAAGGAAGGCATCCCTCCGGA 6544 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | || || | ||| ||||||||||| ||||||| | ||| | || || || Sbjct 6543 TCAGCAGCGTCTCATATTTGCCGGTAAACAGCTTGAGGACGGCCGTACACTTGCCGATTA 6484 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 || ||||| |||||||| || Sbjct 6483 TAATATTCAGAAGGAGTCCAC 6463 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/246 (67%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| |||| || || || || || |||| ||| | Sbjct 6431 ATGCAGATCTTCGTTAAAACCCTAACCGGTAAGACGATCACTCTCGAGGTCGAGAGTTCA 6372 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || || | || |||||| Sbjct 6371 GATACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCAG 6312 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | || ||||| || |||| |||| || ||| |||| || ||||| Sbjct 6311 CAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGATTACAAT 6252 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 ||||| ||||||||||| | || | || ||||| | || || || || |||| Sbjct 6251 ATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAGGCTCCGCGGTGG----GATGCAAAT 6196 Query 107796 ATTTGT 107801 |||||| Sbjct 6195 ATTTGT 6190 >seq31910 Length=2189 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || ||||| |||||| | || || |||||| | || | || |||| ||| Sbjct 1041 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCGTAACACTAGAGGTGGAGAGCTC 982 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | ||||| | | | | || || |||||| ||||| |||||| | ||| || | Sbjct 981 G-GATACAATTGACAATGTGAAGGCCAAGATTCAGGATAAGGAAGGCATTCCCCCAGACC 923 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | || | ||| || || ||||| || || | || | || ||||||| Sbjct 922 AGCAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGACGGACCCTTGCAGACTACA 863 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||| ||||| || || | ||| |||| | |||||| | || |||| Sbjct 862 ACATTCAGAAGGAATCAACTCTTCACTTGGTCCTTAGATTGAGGGGAGGAA 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397798293848095