Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq48903 107 2e-18 >seq48903 Length=19398 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 51851 GGTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCA 51910 |||| | ||||| |||| ||||| ||| ||| || || ||| ||||||| | || || Sbjct 10057 GGTTGAGAGACACTTGAATGATGGAGATTTTGTTCTTTTTAATCGGCAACCTAGTCTGCA 9998 Query 51911 TAAAGCTTCTATGCAAAGTTTTAAAG--TTAAAATTCAACCAGTAAAAACATTTAAAATG 51968 |||| || || || | | || ||||||| ||| |||||| | || Sbjct 9997 TAAAATGTCAAT--AATGGGGCATAGGATTAAAATCATGCCATATTCAACATTCCGATTG 9940 Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 9939 AATTTGTCTGTTACTTCCCCATATAATGCTGATTTTGATGGGGATGAAATGAACATGCAT 9880 Query 52029 GTTCCTCAATCATATGGAGCTACTGCTGAA 52058 ||||||||||||| || | ||| || ||| Sbjct 9879 GTTCCTCAATCATTTGAAACTAGAGCAGAA 9850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633416133419400