Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq48903 104 3e-17 >seq48903 Length=19398 Score = 104 bits (114), Expect = 3e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 50301 GGTTAAAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCA 50360 |||| | ||||| |||| ||||| ||| ||| || || ||| ||||||| | || || Sbjct 10057 GGTTGAGAGACACTTGAATGATGGAGATTTTGTTCTTTTTAATCGGCAACCTAGTCTGCA 9998 Query 50361 TAAAGCTTCTATGCAAAGTTTTAAAG--TTAAAATTCAACCAGTAAAAACATTTAAAATG 50418 |||| || || || | | || ||||||| ||| |||||| | || Sbjct 9997 TAAAATGTCAAT--AATGGGGCATAGGATTAAAATCATGCCATATTCAACATTCCGATTG 9940 Query 50419 AATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 50478 ||||| || | ||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 9939 AATTTGTCTGTTACTTCCCCATATAATGCTGATTTTGATGGGGATGAAATGAACATGCAT 9880 Query 50479 GTTCCTCAATCATATGGAGCTACTGCTGAA 50508 ||||||||||||| || | ||| || ||| Sbjct 9879 GTTCCTCAATCATTTGAAACTAGAGCAGAA 9850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626788165132800