Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq48903 113 1e-19 seq33542 87.8 4e-12 seq45191 84.2 5e-11 >seq48903 Length=19398 Score = 113 bits (124), Expect = 1e-19 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||| |||||||| |||| ||||| || ||| ||||||| |||||||||||| Sbjct 10050 AGACACTTGAATGATGGAGATTTTGTTCTTTTTAATCGGCAACCTAGTCTGCATAAAATG 9991 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGATTAAATGTAA 305423 || || |||| |||| | ||| || || | ||| | |||| ||||| ||| | Sbjct 9990 TCAATAATGGGGCATAGGATTAAA--ATCATGCCATATTCAACATTCCGATTGAATTTGT 9933 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 9932 CTGTTACTTCCCCATATAATGCTGATTTTGATGGGGATGAAATGAACATGCATGTTCCTC 9873 Query 305484 AATCA 305488 ||||| Sbjct 9872 AATCA 9868 >seq33542 Length=6995 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 279899 AAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTA 279958 |||||| | | | ||| |||||| ||||| || || |||||| || |||||||| Sbjct 2612 AAGATTCTTTACTGTTCTTTCAAGAGAAACTTTGTCAAGGAAGCAAAAGTAGCTCAGTTC 2553 Query 279959 GCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTG 280016 | |||||||| || || || ||| ||| ||||| ||||| || ||||| || | Sbjct 2552 TCTGGTTATGTCTCTGAGCACTCAGCTTACCATCATGGTGAGCAGAGTCTCGCCA--GCA 2495 Query 280017 CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAA 280076 | || | ||| | || || |||||| ||| ||||| | ||||| ||| ||||| Sbjct 2494 CCATAATTGGTATGGCTCAGGATTTTGTGGGCAGTAACAATATCAATCTTCTTCAACCAA 2435 Query 280077 ATGGTCAATTTGGT 280090 ||||||| |||||| Sbjct 2434 ATGGTCAGTTTGGT 2421 >seq45191 Length=2865 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 167210 AAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATT 167269 |||||| || | |||||||||| || | | | | |||| |||||||| |||||| Sbjct 2379 AAAAGAACAAATTAAATCTTTATCAACCGTTAACAAAGCACCGGCATTATCAAATTCACC 2320 Query 167270 CGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACC 167329 |||| |||| ||||||||||| ||||| | | | | ||| ||| || || || || Sbjct 2319 ACCATAGTTTGATGCTGAAAATATGGTAACCAGTCTTCTTTTGGCAAAGAACTCGTAGCC 2260 Query 167330 ATCTTCAACAACTTCATGGGCACG 167353 ||||||||||| || ||| || || Sbjct 2259 ATCTTCAACAATTTGATGAGCTCG 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183439264217655