Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq53181 113 3e-20 seq4370 111 1e-19 seq24190 96.9 2e-15 seq23310 87.8 1e-12 >seq53181 Length=15488 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||| || || ||| ||| ||||||||||| ||||||| Sbjct 5520 ACCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGC 5579 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| ||| |||| |||||||||||||| |||||||| | | ||| || || | || Sbjct 5580 CAATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGG 5639 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| || | || | || | ||| || ||| | Sbjct 5640 AATCCCTTCCTTATCTTGAATTTT-TGCCTTGACGTTATCGATGGTATCAGAACTTTCAA 5698 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || ||||| |||||||| | ||||| ||||| || ||||| Sbjct 5699 CCTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCAT 5747 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || || || ||||||| ||||| || |||| || | || Sbjct 6456 ATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTG 6515 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| |||||||| || | |||||||||||| | || | ||||| ||||| || || Sbjct 6516 TTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 6575 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| || | ||| ||| || || || | || || || ||||| | Sbjct 6576 -AGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGG 6634 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| |||||||||||||| Sbjct 6635 TTAGGGTTTTGACAAAGATCTGCAT 6659 >seq4370 Length=4242 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| |||||| ||| || || |||||||| || | Sbjct 2308 CCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2367 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||| ||||||||||||||||| | |||||| ||| | || Sbjct 2368 AGGGTGCGACCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2427 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| || || ||||| ||| |||| ||| | |||||| ||| || Sbjct 2428 ATGCCTTCCTTATCCTGGATTTTGGCCTTC-ACATTGTCAATGGTGTCTGAGCT---CTC 2483 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | ||||| || ||||| || | || || ||||| || |||||| Sbjct 2484 CACCTCCAAAGTGATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCATA 2535 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || ||| ||| || || ||||||||||||| Sbjct 2535 ACCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGC 2594 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| |||| ||| || |||||||||||||| | |||||| ||| | || Sbjct 2595 CAGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 2654 Query 33642 CACACCTTCTTTGTC 33656 | ||||| || || Sbjct 2655 AATGCCTTCCTTATC 2669 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||| | ||| ||||| | || || Sbjct 3237 CACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCGAGGGTGCGGCCATCTTC 3296 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | |||||| || || || ||||| | |||||||||| | || | |||||| || || Sbjct 3297 AAGTTGTTTACCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATACCTTCCTTATCTTG 3356 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 || || || | ||||| || | ||| || | | | || || || | || || ||| Sbjct 3357 GATCTT-TGCCTTAACATTATCGATGGTATC-CGAGCTCTCGACCTCGAGAGTAATGGTT 3414 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | |||||||| || || ||||| Sbjct 3415 TTTCCGGTGAGGGTTTTTACGAATATTTGCAT 3446 >seq24190 Length=3131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | |||| ||| || || ||| || || ||||||||||| | Sbjct 1482 CACCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCG 1423 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || | | || || | || |||||||| || || | |||||||||||| | | Sbjct 1422 CTAGGGTCCTGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTG 1363 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||||| | | |||| ||| | ||||||| ||||| Sbjct 1362 GAATTCCTTCCTTGTCTTGGATTTT-AGCCTTGACATTGTCAATGGTGTCGGAGGATTCA 1304 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||| |||| ||||| || ||||||||||| Sbjct 1303 ACCTCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 1254 >seq23310 Length=1212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | || | || || ||| ||||||||| || || || || | Sbjct 479 ACCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATATTATAGTCAGC 538 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | ||||| | ||||| || || ||||||| ||||||||||||| | || Sbjct 539 AAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGG 598 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | | ||||| ||| | ||||| ||| | Sbjct 599 AATGCCTTCCTTGTCCTGAATCTT-GGCCTTAACATTGTCAATAGTGTCTGAGCT---CT 654 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | || || || || || || || || || || || |||||||| Sbjct 655 CCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTCACGAATATCTGCAT 706 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||||||| ||||| || || || || ||||| || | Sbjct 708 CCACCCCTCAGTCGCAGCACCAAATGAAGAGTCGATTCCTTCTGGATATTGTAGTCAGCA 767 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | || ||||| ||||||||||| || ||||||||| | || Sbjct 768 AGGGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAAGCGTTGCTGATCTGGAGGA 827 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| ||| || || | |||| || | |||||| ||| || Sbjct 828 ATGCCTTCCTTGTCCTGAATCTT-GGTCTTGACATTATCAATGGTGTCTGAGCT---CTC 883 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | ||||| || ||||| || || || || || || |||||||| Sbjct 884 CACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTCACGAATATCTGCAT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327815231121600