Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq12275 87.8 4e-12 >seq12275 Length=3788 Score = 87.8 bits (96), Expect = 4e-12 Identities = 188/268 (70%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 299037 GGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTG 299096 || ||||| | ||||||| | || || | |||||||||||||| | | | | | Sbjct 1116 GGAGCATTAATTGCTGGTGCAAAATACAGAGGTGAATTTGAAGAGAGACTGAAAGCTGTA 1175 Query 299097 CTAAAAGAACTA-AAGAAACGTGAA---AATACTATTGTTTTCATTGATGAAATTCATAT 299152 || |||||| | ||||| | |||| || |||| |||||||||||||||||||| | Sbjct 1176 CTCAAAGAAGTTGAAGAAGC-TGAAGGAAAAGTTATTCTTTTCATTGATGAAATTCATCT 1234 Query 299153 TATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACATG-AGC-AATATGCTTAAG 299210 | | |||| |||||| || || | | || || |||| ||| || ||| || | || Sbjct 1235 TGTTCTTGGTGCTGGT--CG-AACTGAAGGGTCAATGG--ATGCTGCAAATCTGTTCAAA 1289 Query 299211 CCAGCACTTTCACGTGGTGAGATT--CGTGTAATTGGTGCAACAACATATGATGAATATC 299268 ||| ||| | | ||| | ||| |||| |||||||| || || | ||||| |||| Sbjct 1290 CCAATGCTTGCTAGAGGTCA-ATTGAGGTGT-ATTGGTGCTACCACTTTGGATGAGTATC 1347 Query 299269 GTAAAAATATCGAGAAAGATAGTGCATT 299296 | ||| || |||| |||||| |||||| Sbjct 1348 GAAAATATGTCGAAAAAGATGCTGCATT 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112001306696995