Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq42083 91.5 1e-13 seq23310 86.0 6e-12 seq31910 84.2 2e-11 seq53181 82.4 7e-11 seq4370 82.4 7e-11 >seq42083 Length=68989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT 131961 ||||||||||| |||| ||| | | ||||||| || || ||||| || || ||| | ||| Sbjct 15140 CGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGCT-AGGGT 15198 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | || |||||||| || |||| |||| || ||||| |||||||| || ||||| Sbjct 15199 CCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGGGATGCC 15258 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || || | | || | ||||||| | ||| || || | Sbjct 15259 CTCCTTATCCTGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAACCTCCAA 15318 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 15319 AGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCAT 15360 >seq23310 Length=1212 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| || || ||||| | ||| || ||| ||||||||||| || | Sbjct 513 GACTCTTTTTGGATATTATAGTCAGCAAGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCG 572 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| ||||||||||| |||||||| || || ||| || || | Sbjct 573 AAAATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTAACA 632 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||||||| | || | || || ||||||| || || Sbjct 633 TTGTCAATAGTGTCTGAGCTCTCCACTTCCAAAGTAATGGTCTTCCCAGTCAATGTCTTC 692 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 693 ACGAATATCTGCATG 707 >seq31910 Length=2189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||| || || |||||||||||||| | ||| || |||||| Sbjct 832 ACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCA 891 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| | | ||| || ||||| || |||||||| ||||| | Sbjct 892 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGA 951 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | ||||| | |||||| || | || | ||||| Sbjct 952 ATCTTGGCCTTCACATTGTCAATTGTATCCGAGCTCTCCACCTCTAGTGTTACGGTTTTC 1011 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | || |||||||| Sbjct 1012 CCAGTGAGAGTTTTCACAAATATCTGCAT 1040 >seq53181 Length=15488 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | ||||| || ||||| || || ||| | ||||| || || Sbjct 6450 AACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTC 6509 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||||| | | || |||||||| ||||| ||||| |||||||| || || Sbjct 6510 AAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTG 6569 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | ||||||| ||| ||||||| || | || || Sbjct 6570 GATCTTAGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTT 6629 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || ||||| | || |||||||| Sbjct 6630 ACCGGTTAGGGTTTTGACAAAGATCTGCAT 6659 >seq4370 Length=4242 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || || ||||| |||||||||||| | ||| ||| ||||||| Sbjct 2782 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTCCGCCCATCTTCG 2841 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| | | || || ||||| || || || || ||||| Sbjct 2842 AGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGAATTCCCTCCTTATCCTGG 2901 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | ||||| | |||||| || | || | || || Sbjct 2902 ATTTTAGCTTTCACGTTATCGATGGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTC 2961 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || | ||| ||||||||| Sbjct 2962 CCCGTGAGAGTCTTGACGAAGATCTGCATG 2991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475289467777800