Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq53181 95.1 1e-14 >seq53181 Length=15488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || || ||||| ||||||| || ||||||| |||| ||||| || | Sbjct 6431 ATGCAGATCTTCGTTAAAACCCTAACCGGTAAGACGATCACTCTCGAGGTCGAGAGTTCA 6372 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || || ||| || || ||||| || || || ||||| Sbjct 6371 -GATACCATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 6313 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | || ||| || ||| | ||||| | |||| | ||||||||| Sbjct 6312 GCAGAGACTTATCTTCGCCGGTAAGCAATTGGAAGACGGCAGAACGTTGGCCGATTACAA 6253 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 |||||| || || || ||| ||||| | || || || Sbjct 6252 TATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAG 6217 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | ||||| || ||||||| | ||||||||| Sbjct 6203 ATGCAAATATTTGTCAAAACCCTCACCGGTAAGACGATCACCTTGGAAGTCGAAAGTTCT 6144 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || ||| ||||| || || || || || |||||| Sbjct 6143 GATACTATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 6084 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | || ||| || || | ||||| | |||| | | ||| ||||| Sbjct 6083 CAGCGCTTGATCTTCGCCGGTAAGCAGTTGGAAGACGGCAGAACTTTGGCCGACTACAAC 6024 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||| || || || ||| ||||| | || || || Sbjct 6023 ATTCAGAAGGAGTCTACCCTTCATCTTGTTTTGAG 5989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443860069773600