Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03]
221,855 sequences; 236,770,010 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq34486 192 8e-44
seq19857 105 9e-18
seq187803 98.7 1e-15
seq113474 96.9 5e-15
seq60807 96.9 5e-15
seq105796 87.8 2e-12
>seq34486
Length=7597
Score = 192 bits (212), Expect = 8e-44
Identities = 583/892 (65%), Gaps = 14/892 (2%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| || ||||| ||||| | || ||||| ||||| || || || | ||| |||
Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302
Query 39386 TCCATGAAATCAAACGGATTAGTTG-CATTATAtttttttttAAATCCTAATTCTGAAAT 39444
||||| ||||||| ||||| || | |||| || ||||| | |||| || || |
Sbjct 4301 TCCATCCAATCAAAAGGATT-GTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAG 4243
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
||||| || |||||||| || || || |||| | || | |||||| || | ||
Sbjct 4242 TAATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAG 4183
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
| | ||| || || || || |||||| | || || | ||||| || | || ||
Sbjct 4182 TGCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAAT 4123
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
| | | ||| || ||| | ||| | | | | ||||||||| ||
Sbjct 4122 TCCCCTAATTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCAAA 4063
Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684
||||||||| || ||||| || || ||| || ||||| || || || | || ||||
Sbjct 4062 GTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAA 4003
Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTT 39743
|| |||||||||||| | |||||| || | |||||||| | || || || || || || |
Sbjct 4002 TAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGAAAAATATTCCCT 3944
Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA----TGTATCCAC 39799
| || || || ||||| | | ||| || | | || | | | ||||||
Sbjct 3943 CAACGCAAGCGAAAGCAACCAAACGCTCGGCGAA----GGATTCTGAGCCGTCTATCCAT 3888
Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859
| | ||||| | |||||||| | || ||||| || || || || || | ||||||
Sbjct 3887 TGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGC 3828
Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919
|| || || | ||| |||| || || || | | ||||||||||| || ||
Sbjct 3827 CTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGGAG 3768
Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979
|| || || || || || || ||||| || || ||| | || || | || || |||
Sbjct 3767 TGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGACC 3708
Query 39980 T-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038
| || | ||| | | || | ||| || || || ||||| ||||||||| ||
Sbjct 3707 TCCTTCATGAAA-CGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGAA 3649
Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098
|| | || || ||||||| | | ||||||||| || | ||| | ||| | |
Sbjct 3648 GGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAAC 3589
Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158
|||| || | ||| ||||| || || ||||| || || ||||| ||||| ||||||||
Sbjct 3588 ATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 3529
Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210
| ||| || ||| | ||||| ||||| || ||| ||||||| || |||
Sbjct 3528 CTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTT 3477
>seq19857
Length=23048
Score = 105 bits (116), Expect = 9e-18
Identities = 118/155 (76%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549
|||||||||||||| | || || | || ||||| || ||||| |||| ||| ||||
Sbjct 2270 TCTTTTTCATATTGCTTGTAAAGTCTCTCAAATTCTTCACCCCATCAATCAGCCAGTCCA 2211
Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609
||| ||||||||||||| | ||| ||||| | ||| || | ||| | ||||||||
Sbjct 2210 GGAGATTCATTTGGACAAAACAAAGACCATTCCCCATTATTTTCAACCCTCTTCATAAAA 2151
Query 69610 AGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643
||||| || | ||||||||| ||| || |||||||
Sbjct 2150 AGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTC 2117
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | || | ||||| | |||| | || | |||||| || | |||||||
Sbjct 1766 CCTCCTTGTTCCACATAACGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACCA 1707
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||| || |||||||||||| |||| || || || ||||||
Sbjct 1706 TTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAA 1647
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
||||| || ||||| || ||| ||| |||||| || | || ||||| ||
Sbjct 1646 AGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGGTATCATAAATG 1587
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| || ||||| | ||| ||||| | | |||||||||
Sbjct 1586 CCTTCAATGCTGTATTCTTTCATGCACACCAAGAAACAGCTA 1545
>seq187803
Length=851
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549
|||||||| ||||| | || || | || ||||| || ||||| |||| ||| |||
Sbjct 328 TCTTTTTCGTATTGCATGTAGAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGCCCA 387
Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609
||| ||||||||||||| | ||| ||||| | |||| || ||||| | |||||||
Sbjct 388 GGAGATTCATTTGGACAAAACAAAGACCATTCCTCATTATTTTTAACCCTCCTCATAAAA 447
Query 69610 AGATCGGGAATCCAAAGAGCTATA-AAGAGATC 69641
||||| || | ||||||||| ||| || |||||
Sbjct 448 AGATCAGGCACCCAAAGAGC-ATAGAAAAGATC 479
>seq113474
Length=757
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831
||||| | |||| | || | |||||| || | ||||||||| ||| | |||||||| ||
Sbjct 188 GCAGTATCATTAAATACCCGCAGCATTGGCACAATACCATTGGATGTCCCATTTGTACCT 247
Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891
|||||||||||| |||| || || || |||||| ||||| || ||||| || |
Sbjct 248 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 307
Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951
|| ||| |||||| || | || ||||| || || || ||||| || ||| ||
Sbjct 308 TTGCTGATATCAGCACATTCCTTAAGGGTATCATAAATGCCTTCAATGCTGTCTTCTTTC 367
Query 69952 ATGTTAAGAAGAAAACAGCTA 69972
||| | | |||||||||
Sbjct 368 ATGCACACCAAGAAACAGCTA 388
>seq60807
Length=868
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831
||||||| |||| | || | ||||| || | ||||||||| ||| | |||||||| ||
Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTGCCATTTGTACCT 68
Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891
|||||||||||| |||| || || || |||||| ||||| || ||||| || |
Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 128
Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951
|| ||| |||||| || | || ||||| || ||| | ||||| || ||| ||
Sbjct 129 TTGCTGATATCAGCACATTCCTTAAGAGTATCATAAATGCCCCCAATGCTGTCTTCTTTC 188
Query 69952 ATGTTAAGAAGAAAACAGCTA 69972
||| | | |||||||||
Sbjct 189 ATGCACACCAAGAAACAGCTA 209
>seq105796
Length=542
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831
||||||| |||| | || | ||||| || | ||||||||| ||| |||||||||| ||
Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTACCATTTGTACCT 68
Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGC 69887
|||||||||||| |||| || || || |||||| ||||| || ||||| ||
Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGC 124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685003873102200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |