Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq34486 192 8e-44 seq19857 105 9e-18 seq187803 98.7 1e-15 seq113474 96.9 5e-15 seq60807 96.9 5e-15 seq105796 87.8 2e-12 >seq34486 Length=7597 Score = 192 bits (212), Expect = 8e-44 Identities = 583/892 (65%), Gaps = 14/892 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || ||||| ||||| | || ||||| ||||| || || || | ||| ||| Sbjct 4361 TTCTGATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGC 4302 Query 39386 TCCATGAAATCAAACGGATTAGTTG-CATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| || | |||| || ||||| | |||| || || | Sbjct 4301 TCCATCCAATCAAAAGGATT-GTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAG 4243 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||||| || |||||||| || || || |||| | || | |||||| || | || Sbjct 4242 TAATCTGTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAG 4183 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | | ||| || || || || |||||| | || || | ||||| || | || || Sbjct 4182 TGCACATGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAAT 4123 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | | ||| || ||| | ||| | | | | ||||||||| || Sbjct 4122 TCCCCTAATTCTCTCCTCGCTCAACTTCACCTTCAAAAGGCTGTAGAGTAAGCAGGCAAA 4063 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 ||||||||| || ||||| || || ||| || ||||| || || || | || |||| Sbjct 4062 GTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAA 4003 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTT 39743 || |||||||||||| | |||||| || | |||||||| | || || || || || || | Sbjct 4002 TAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGAAAAATATTCCCT 3944 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA----TGTATCCAC 39799 | || || || ||||| | | ||| || | | || | | | |||||| Sbjct 3943 CAACGCAAGCGAAAGCAACCAAACGCTCGGCGAA----GGATTCTGAGCCGTCTATCCAT 3888 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | | ||||| | |||||||| | || ||||| || || || || || | |||||| Sbjct 3887 TGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGC 3828 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 || || || | ||| |||| || || || | | ||||||||||| || || Sbjct 3827 CTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTATACATCTCGGAG 3768 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || || || || || || ||||| || || ||| | || || | || || ||| Sbjct 3767 TGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGGAAACCTGGACC 3708 Query 39980 T-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 | || | ||| | | || | ||| || || || ||||| ||||||||| || Sbjct 3707 TCCTTCATGAAA-CGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAGCGGCAAAGAA 3649 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | || || ||||||| | | ||||||||| || | ||| | ||| | | Sbjct 3648 GGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCCACTGGGAAAC 3589 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 |||| || | ||| ||||| || || ||||| || || ||||| ||||| |||||||| Sbjct 3588 ATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 3529 Query 40159 GTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 | ||| || ||| | ||||| ||||| || ||| ||||||| || ||| Sbjct 3528 CTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGTTT 3477 >seq19857 Length=23048 Score = 105 bits (116), Expect = 9e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 |||||||||||||| | || || | || ||||| || ||||| |||| ||| |||| Sbjct 2270 TCTTTTTCATATTGCTTGTAAAGTCTCTCAAATTCTTCACCCCATCAATCAGCCAGTCCA 2211 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 ||| ||||||||||||| | ||| ||||| | ||| || | ||| | |||||||| Sbjct 2210 GGAGATTCATTTGGACAAAACAAAGACCATTCCCCATTATTTTCAACCCTCTTCATAAAA 2151 Query 69610 AGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 ||||| || | ||||||||| ||| || ||||||| Sbjct 2150 AGATCAGGCACCCAAAGAGC-ATAGAAAAGATCTC 2117 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | ||||| | |||| | || | |||||| || | ||||||| Sbjct 1766 CCTCCTTGTTCCACATAACGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACCA 1707 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| || |||||||||||| |||| || || || |||||| Sbjct 1706 TTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAA 1647 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| || ||||| || ||| ||| |||||| || | || ||||| || Sbjct 1646 AGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGGTATCATAAATG 1587 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || ||||| | ||| ||||| | | ||||||||| Sbjct 1586 CCTTCAATGCTGTATTCTTTCATGCACACCAAGAAACAGCTA 1545 >seq187803 Length=851 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 |||||||| ||||| | || || | || ||||| || ||||| |||| ||| ||| Sbjct 328 TCTTTTTCGTATTGCATGTAGAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGCCCA 387 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 ||| ||||||||||||| | ||| ||||| | |||| || ||||| | ||||||| Sbjct 388 GGAGATTCATTTGGACAAAACAAAGACCATTCCTCATTATTTTTAACCCTCCTCATAAAA 447 Query 69610 AGATCGGGAATCCAAAGAGCTATA-AAGAGATC 69641 ||||| || | ||||||||| ||| || ||||| Sbjct 448 AGATCAGGCACCCAAAGAGC-ATAGAAAAGATC 479 >seq113474 Length=757 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||| | |||| | || | |||||| || | ||||||||| ||| | |||||||| || Sbjct 188 GCAGTATCATTAAATACCCGCAGCATTGGCACAATACCATTGGATGTCCCATTTGTACCT 247 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||||||||| |||| || || || |||||| ||||| || ||||| || | Sbjct 248 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 307 Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951 || ||| |||||| || | || ||||| || || || ||||| || ||| || Sbjct 308 TTGCTGATATCAGCACATTCCTTAAGGGTATCATAAATGCCTTCAATGCTGTCTTCTTTC 367 Query 69952 ATGTTAAGAAGAAAACAGCTA 69972 ||| | | ||||||||| Sbjct 368 ATGCACACCAAGAAACAGCTA 388 >seq60807 Length=868 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||||| |||| | || | ||||| || | ||||||||| ||| | |||||||| || Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTGCCATTTGTACCT 68 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 |||||||||||| |||| || || || |||||| ||||| || ||||| || | Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 128 Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951 || ||| |||||| || | || ||||| || ||| | ||||| || ||| || Sbjct 129 TTGCTGATATCAGCACATTCCTTAAGAGTATCATAAATGCCCCCAATGCTGTCTTCTTTC 188 Query 69952 ATGTTAAGAAGAAAACAGCTA 69972 ||| | | ||||||||| Sbjct 189 ATGCACACCAAGAAACAGCTA 209 >seq105796 Length=542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 69772 GCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 ||||||| |||| | || | ||||| || | ||||||||| ||| |||||||||| || Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTACCATTTGTACCT 68 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGC 69887 |||||||||||| |||| || || || |||||| ||||| || ||||| || Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685003873102200