Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq12275 87.8 4e-12 >seq12275 Length=3788 Score = 87.8 bits (96), Expect = 4e-12 Identities = 188/268 (70%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 |||||| |||||| |||| || ||| ||||| ||||| | || || |||||||| ||| Sbjct 1375 AATGCAGCATCTTTTTCGACATATTTTCGATACTCATCCAAAGTGGTAGCACCAAT-ACA 1317 Query 332097 CG--AATCTCACCACGTGAAAGTGCTGGCTTAAGCATATT-GCT-CATGTCCATAGAACC 332152 | ||| | ||| | | ||| ||| || | || ||| || ||| |||| || || Sbjct 1316 CCTCAAT-TGACCTCTAGCAAGCATTGGTTTGAACAGATTTGCAGCAT--CCATTGACCC 1260 Query 332153 ATTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATT 332212 | | || || |||||| |||| | || |||||||||||||||||||| |||| || Sbjct 1259 TTCAGTT-CG--ACCAGCACCAAGAACAAGATGAATTTCATCAATGAAAAGAATAACTTT 1203 Query 332213 ---TTCACGTTTCTT-TAGTTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCAC 332268 |||| | ||||| | |||||| || | | | | | |||||||||||||| | Sbjct 1202 TCCTTCA-GCTTCTTCAACTTCTTTGAGTACAGCTTTCAGTCTCTCTTCAAATTCACCTC 1144 Query 332269 GATACTTAGTACCAGCAGTCAATGCACC 332296 || || | ||||||| | ||||| || Sbjct 1143 TGTATTTTGCACCAGCAATTAATGCTCC 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1110664317944040