Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq34486 140 3e-28 >seq34486 Length=7597 Score = 140 bits (154), Expect = 3e-28 Identities = 384/582 (66%), Gaps = 10/582 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | ||| || ||| | |||||||| || || |||| || || | Sbjct 3497 TGTTCCCAATCCAATACCCTGAGATTTGGGAGATGTACAAGAAGGCTGAGGCTTCCTTCT 3556 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || ||||| ||| | || ||| | | || ||| | | | || Sbjct 3557 GGACTGCCGAGGAAGTCGATCTCTCTGTAGATGTTTCCCAGTGGGAAAAACTTACCCCCG 3616 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | ||| ||| ||||| || ||| | || || ||||| || || || || || Sbjct 3617 ATGAACGACACTTTATTACTCACGTTCTTGCCTTCTTTGCCGCTTCAGATGGCATTGTTC 3676 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 || ||| | | |||| || | | || || || | | || || || ||| | Sbjct 3677 TGGAGAATCTCGCCGGTCGTTTCATGAAGGAGGTCCAGGTTTCCGAGGCCCGTGCTTTCT 3736 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| |||||||| ||||| || |||||||| || || ||||| ||||| ||| | || | Sbjct 3737 ATGGTTTTCAAATAGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCCTGTTGGAGA 3796 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT- 44065 ||||||| || ||| |||||||||| | | ||| | || || || || | ||| Sbjct 3797 CGTACATTAAGGATTCCAACGAGAAGCACAGGCTCTTTCACGCAATCGAGACCATCCCTT 3856 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGATTCTTTT 44122 ||| ||| | ||||| | |||||||| |||||||| | ||| || || || Sbjct 3857 GCGTGGAAA-AGAAAGCCAAGTGGGCCCTCCAATGGATAGACGGCTCA---GAATCCTTC 3912 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT-CGTTTGC 44181 | || || | || || || || || || || || || || || ||| | ||||| Sbjct 3913 GCCGAGCGTTTGGTTGCTTTCGCTTGCGTTGAGGGAATATTTTTCTCCGGAAGCTTTTGC 3972 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 | || ||||||||||| || || ||||| |||| || || || || || || ||||| Sbjct 3973 T-CAATTTTTTGGTTAAAAAAGCGTGGTTTATTGCCCGGTTTAACCTTCTCGAACGAGTT 4031 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || | || || || | ||||| || ||||| ||||| Sbjct 4032 GATTTCGAGGGACGAGGGTCTTCATTGTGACTTTGCCTGCTT 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396381335489275