Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq53181 84.2 2e-11 seq23310 84.2 2e-11 >seq53181 Length=15488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || |||||||| || ||| || || | || |||| || ||||||||||| Sbjct 6463 GTGGACTCCTTCTGAATATTATAATCGG-CAAGTGTACGGCCGTCCTCAAGCTGTTTACC 6521 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| |||||||| || | || || || || |||||| | || Sbjct 6522 GGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTT 6581 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | || ||||| ||||| || | || || || || || Sbjct 6582 GACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGTTAGGGT 6641 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||| Sbjct 6642 TTTGACAAAGATCTGCAT 6659 >seq23310 Length=1212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || ||||| || ||||| | || || ||||| || ||||||||||| Sbjct 934 TGCCACCCCTCAGCCGCAGCACTAAATGAAGAGTTGATTCTTTCTGGATATTGTAGTCAG 993 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| || || |||||||| ||| |||| | | ||| ||||| || | Sbjct 994 CAAGGGTACGACCGTCCTCCAGTTGTTTACCAGCGAAAATCAACCTCTGCTGATCTGGTG 1053 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||| | || | | || | ||||||| ||| | Sbjct 1054 GGATACCTTCCTTGTCTTGAATCTTTGTCTTGACATTGTCAATGGTGTCTGAACTTTCCA 1113 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | || || || | || || |||||||||||||| Sbjct 1114 CCTCAAGAGTGATGGTCTTCCCGGTTAAGGTCTTAACAAAGATTTGCAT 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423785437802760