Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq60807 102 1e-16 seq34486 87.8 2e-12 seq21646 86.0 8e-12 >seq60807 Length=868 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||| || || ||||||||||| ||||| || | || ||| | ||| | |||| Sbjct 409 TGGGGTCTGGGAGTTCCAGCATTGAAAAGGGTAGGAGACGCATGAGTAAACCATCTTTGG 468 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | |||| ||| || ||| |||||||| ||| |||||| || | | Sbjct 469 GACATCAAATGATATGTTCTTATAG-CAGCTTCAATGTCATCCTTGTGGATCCCAACAGA 527 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| ||||||| ||||| |||| | | | |||| || || || | || | Sbjct 528 AACCCTCATCAACATGTGTTGTGGTCTTTCAACTACTTTTCCATGGA-CCTTTAAGAGGT 586 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||| ||||||| ||||||||| || ||||| ||||||| Sbjct 587 AAGACCTCTCAAGAGTTTTGAAGCCAAAGTAATCATAATCAAAGTCCCG 635 >seq34486 Length=7597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/276 (67%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || || |||||||| || | ||||| | || || |||||| || ||| Sbjct 4068 GGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACC 4009 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||| | ||| ||||| || |||||| |||| | ||| || |||||||| || || Sbjct 4008 GGGCAATAAACCACGCTTTTTTAACCAAAAAATTGAGCAAAAGCTTCCGGAGAAAAATAT 3949 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAA 122837 ||||| || || || || |||| | || ||||||||||| || | || | Sbjct 3948 TCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGA---GCCGTCTAT 3892 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||||| | ||||| || || ||||| || | || || | || | ||| || | ||| Sbjct 3891 CCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAA 3832 Query 122898 TAAC---TGCTTCTTTTCAGATCCATCCTTAATGTA 122930 | | ||||||| | || |||||||||||| Sbjct 3831 GAGCCTGTGCTTCTCGTTGGA---ATCCTTAATGTA 3799 >seq21646 Length=15599 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/281 (67%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| ||||| ||||| ||||||||| | Sbjct 7377 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTTTCATCATTTCC---- 7432 Query 11600 ATACCACCA-GCACTGCG-----TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| || |||| |||| | || || ||||||||||||||||| || ||| Sbjct 7433 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCTACAGCATCAATCTCATCAATAAATACA 7490 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || || | || | ||||| | ||| | || || || || ||| Sbjct 7491 ATGCAAGGAGCCTTAGCCTTAGCTTTCTCAAATAAATCCCTCACTCTAGAAGCTCCAACA 7550 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||| | ||||||||| | || || | || | |||||| ||| | ||| Sbjct 7551 CCCACAAAAAGCTCCACAAACTCTGAAGCTGCACAAGAAAAGAATGGTACACCGGCCTCA 7610 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | ||||| ||||| ||||| || Sbjct 7611 CCAGCAACTGCTCTAGCTAAAAGGGTTTTTCCAGTACCAGG 7651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626290349508000