Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq34486 91.5 2e-13 >seq34486 Length=7597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 365/569 (64%), Gaps = 17/569 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || ||||||| ||| |||||||| || ||||| || | ||| |||||| |||||| Sbjct 4356 ATATTCTCCAACCCTCTTTTCGAAGAAATTGGTCTTACCCTGCAAACTGATAAGCTCCAT 4297 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 ||||||| || || | || | ||| | ||| | | || | | Sbjct 4296 CCAATCAAAAGGATTGTGGACATTGTACATTTTTCCATATCCCAAGGCTCCTAGTAATCT 4237 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 |||| || ||||||| |||| | ||| || ||||| || | || ||| Sbjct 4236 GTCCGCAACAAACTCAATATACTGACTCATGAGGTCTCCATTCATCCCAAGCAGTGCACA 4177 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||| |||||||| | | ||| || |||| || |||| || || || || | Sbjct 4176 TGGCAGCGCGTCACATACAAACTCCCTCTCTATTACCACGGCATCGGCTACAATTCCCCT 4117 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGC-----AAAGTCTTGAAGAGTTCCACGGCAAAC 130021 ||| ||||| || || | | | | |||| || | ||||| |||||| Sbjct 4116 AATTCTCTCCTCGC----TCAACTTCACCTTCAAAAGGCT-GTAGAGTAAGCAGGCAAAG 4062 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || || ||||||||||| | || || | || ||||||||| | ||| |||| Sbjct 4061 TCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGTTAAACCGGGCAAT 4002 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 | ||| ||||| || ||||| ||||| | ||||| || ||||| || || ||||| Sbjct 4001 AAACCACGCTTTTTTAACCAAAAAATTGAGCAAAAGCTTCCGGAGAAAAATATTCCCTCA 3942 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTT 130200 || || ||||| |||| | |||||| || ||||| | | | | ||| ||| | Sbjct 3941 ACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGGATTCTGAGCCGTCTAT----CCATTG 3886 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 | ||||||| || || || || | || |||| ||||| ||| || | |||||| Sbjct 3885 GAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTGCGTGAAAGAGCCT 3826 Query 130261 CTTCTTTTCTGATGG-ATCTTTGATGTAC 130288 | ||| || | ||| ||| || |||||| Sbjct 3825 GTGCTTCTC-GTTGGAATCCTTAATGTAC 3798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616720163233800