Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq42542 147 3e-30 seq21646 111 2e-19 >seq42542 Length=7134 Score = 147 bits (162), Expect = 3e-30 Identities = 241/339 (71%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 || || ||||| | ||||| ||||| || || |||| ||| || |||||| || ||| Sbjct 4494 TCGAGAATATCTGCACGATTAGTCGCTGCAATTACAATAATGCCAGTGTTTCCTT--CAA 4437 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| |||||||| |||||||| | |||||| |||| ||| ||||| || | Sbjct 4436 AACCATCCATTTCTGTCAAGAGTTGGTTCAGAGTTTGCTCCCTTTCGTCATTGCCT--CC 4379 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 4378 TCCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 4319 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || |||||| || |||| ||| ||||| || ||||| || || |||||| Sbjct 4318 AGGGGCATTTTCCTTTGC--CTTCTTAAAAAGATCACGAACACGAGAAGCACCAACACCA 4261 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 || |||||||| ||||| | || | ||| |||| || || || || | |||||| Sbjct 4260 ACGAACATCTCAACAAATTCTGAACCTGAA-ATTGAGAAAAATGGAACCCCTGCTTCACC 4202 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || || || | ||||| || |||||||| Sbjct 4201 AGCAATTGCCTTAGCCAGCAATGTCTTTCCGGTACCTGG 4163 >seq21646 Length=15599 Score = 111 bits (122), Expect = 2e-19 Identities = 252/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || |||||||| || ||||||||||| || | ||||||||| | Sbjct 7377 AAACCATCCATTTCAGTCAAAAGCTGATTAATAGTTTGCTCTCTTTCATCATTTCC---- 7432 Query 9674 ATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| || ||| ||| | |||| |||| || ||||||||||||||||| || || Sbjct 7433 --ACCTCCAAGCCCTGCTCCTCTTTGCCTTCCTACAGCATCAATCTCATCAATAAATACA 7490 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 9785 ||||| || || | ||| ||||| | ||||| ||| || | || || | Sbjct 7491 ATGCAAGGAGCCTTAGCCTTAGCTTTCTCAAATAAATCCC--TCACTCTAGAAGCTCCAA 7548 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 |||| ||||| | ||||||||| | || || | ||| | ||| || ||| | | Sbjct 7549 CACCCACAAAAAGCTCCACAAACTCTGAAGCTGCACAAGAAAAGAATGGTACACCGGCCT 7608 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| |||| |||| || | ||| || || || ||||| || || | | || Sbjct 7609 CACCAGCAACTGCTCTAGCTAAAAGGGTTTTTCCAGTACCAGGTGGTCCAACCAAAAGAC 7668 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| ||||||||| || || || ||| | ||||| | || | ||||| | Sbjct 7669 ACCCTTTTGGAATCTTTGCACCCAAAGCAGTGTACTTATCAGGGTTTTTCAAGAAATCAA 7728 Query 9966 CAATTTCTTCCAATTC 9981 ||| ||||| |||||| Sbjct 7729 CAACTTCTTGCAATTC 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581643308440200