Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34486 123 3e-23 >seq34486 Length=7597 Score = 123 bits (136), Expect = 3e-23 Identities = 291/432 (67%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 || || |||||||| || || ||||| ||||| |||| ||| | | | | | || Sbjct 3640 GTTCTTGCCTTCTTTGCCGCTTCAGATGGCATTGTTCTGGAGAATCTCGCC--GGTCGTT 3697 Query 59763 TCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACG 59820 || ||||| |||||| || |||||||||| | ||||| | | ||| || || Sbjct 3698 TCATGAAGGAGGTCCAGGTTTCCGAGGCCCGTGCTTTCTATGGTTTTCAAATAGCCATCG 3757 Query 59821 AGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAG 59880 || ||| |||||||||| ||| ||| || | || | || | |||||| | | | Sbjct 3758 AGAATATTCACTCCGAGATGTATAGTCTCCTGTTGGAGACGTACATTAAGGATTCCAACG 3817 Query 59881 AGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAA 59939 ||||| | || || | || || ||||| |||| || || || | ||||| | Sbjct 3818 AGAAGCACAGGCTCTTTCACGCAATCGAGACCATCCCTTGC-GTGGAAAAGAAAGCCAAG 3876 Query 59940 TGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGC 59998 |||||| | || ||||| || || || ||| || || | ||| | | ||||| || Sbjct 3877 TGGGCCCTCCAATGGATAGACGGCTC-AGAATCCTTCGCCGAGCGTTTGGTTGCTTTCGC 3935 Query 59999 ATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCG 60058 ||||| || ||||| || ||||| || || || | ||||| ||| | |||||||| Sbjct 3936 TTGCGTTGAGGGAATATTTTTCTCCGGAAGCTTTTGCTCAATTTTTTGGTTAAAAAAGCG 3995 Query 60059 TGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||| | |||| || | | ||||| |||||| ||||||| |||||||||| || || Sbjct 3996 TGGTTTATTGCCCGGTTTAACCTTCTCGAACGAGTTGATTTCGAGGGACGAGGGTCTTCA 4055 Query 60119 TCAGGAGTTTGC 60130 | || ||||| Sbjct 4056 TTGTGACTTTGC 4067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547003637881200