Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4370 102 6e-17 seq31911 100 2e-16 seq53181 96.9 2e-15 >seq4370 Length=4242 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || || || || ||| || | || || || ||| | Sbjct 2534 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAGACTATCACTTTGGAGGTGGAGAGCTCA 2475 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| || || ||||| |||| || | Sbjct 2474 GACACCATTGACAAT--GTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCAGACC 2417 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||||||||| ||| |||| || | |||| | || | || |||| Sbjct 2416 AGCAGAGGTTGATTTTTGCCGGAAAGCAACTGGAAGATGGTCGCACCCTGGCTGACTACA 2357 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| |||| | |||||||| | ||| | ||||| || Sbjct 2356 ACATCCAGAAGGAGTCCACTCTTCATTTGGTGCTTCGTCTCCGTGGTGG 2308 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||| || || || |||||| | || || || ||| | Sbjct 2763 AATGCAAATATTTGTCAAGACTCTCACGGGCAAGACTATTACTTTGGAGGTGGAGAGCTC 2704 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| |||| || || || || || || ||||| |||| || Sbjct 2703 GGACACGATTGACAAC--GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGAC 2646 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||||||||| || ||| |||| |||| || | | || |||||||| Sbjct 2645 CAGCAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGACGGTCGTACCCTGGCCGATTAC 2586 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 2585 AACATCCAGAAGGAGTCCACACTTCACTTGGTGCTCCGTCTCCGTGGTGG 2536 >seq31911 Length=2244 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||||||||| ||||||||| |||||| | || || || ||| | Sbjct 822 AATGCAGATATTTGTGAAAACTCTAACTGGGAAAACCATTACATTAGAGGTGGAGAGCTC 763 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || || || ||| ||||| |||||| |||| || Sbjct 762 GGATACCATTGACAAT--GTGAAGGCCAAGATACAGGACAAGGAAGGTATTCCCCCAGAC 705 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || ||||| || || ||| |||| || | |||| | || | || ||| Sbjct 704 CAGCAGAGGTTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGGCAGACTAC 645 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || || || | || ||||| | ||| | ||||| ||| Sbjct 644 AACATCCAGAAGGAATCAACCCTTCACTTGGTGCTTCGTCTCCGTGGTGGC 594 >seq53181 Length=15488 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| || || || ||||| |||| || ||||| | Sbjct 5747 ATGCAAATATTTGTTAAAACTCTCACAGGTAAGACGATTACTCTTGAGGTTGAAAGTTCT 5688 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| ||||| |||||| || || ||||| |||| || Sbjct 5687 GA-----TACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATTCCCCCGG 5633 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || | | |||||||| |||||||||||||| |||| ||| | ||| |||||| Sbjct 5632 ACCAACAGAGACTTATTTTTGCTGGAAAACAATTGGAGGACGGACGAACATTGGCCGATT 5573 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | ||||| ||||| ||| ||| | || |||| ||||| Sbjct 5572 ATAACATACAAAAGGAGTCCACCCTTCACCTGGTGCTGCGT 5532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354900198669585