Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq53181 107 2e-18 seq23310 91.5 1e-13 >seq53181 Length=15488 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || |||||||||||||||||||| || |||| |||||||| Sbjct 6456 ATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCAAGTGTACGGCCGTCCTCAAGCTG 6515 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || |||||||| ||||||||||| || | || | || || ||||| ||| || Sbjct 6516 TTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 6575 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | |||||| ||| || || | || || | || || || Sbjct 6576 AGTCTTGACATTATCGATGGTATCGGAACTCTCGACTTCGAGAGTAATTGTCTTACCGGT 6635 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| |||||||| |||||||| Sbjct 6636 TAGGGTTTTGACAAAGATCTGCATCTT 6662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| ||| |||||||| ||||||||||| Sbjct 5521 CCACCTCTGAGACGCAGCACCAGGTGAAGGGTGGACTCCTTTTGTATGTTATAATCGGCC 5580 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||||||| |||| || | ||||| || ||||| ||||| | ||| ||||| | ||| Sbjct 5581 AATGTTCGTCCGTCCTCCAATTGTTTTCCAGCAAAAATAAGTCTCTGTTGGTCCGGGGGA 5640 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | || || | | ||| ||| || |||| | | | ||||| || || Sbjct 5641 ATCCCTTCCTTAT-CTTGAATTTTTGCCTTGACGTTATCGATGGTATCAGAACTTTCAAC 5699 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | || || | || || || || ||||||||||| ||||||||| Sbjct 5700 CTCAAGAGTAATCGTCTTACCTGTGAGAGTTTTAACAAATATTTGCATC 5748 >seq23310 Length=1212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | || | || || ||| ||||||||| |||||||| || ||| Sbjct 480 CCACCTCTCAGGCGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATATTATAGTCAGCA 539 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||||| | || || ||||||||||| || || || ||||||||||| || | || Sbjct 540 AGGGTTCGTCCATCGTCGAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGA 599 Query 39178 ACGCTCTCTTTGTCC 39192 | || || |||||| Sbjct 600 ATGCCTTCCTTGTCC 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428384169773615