Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq34486 208 1e-48 >seq34486 Length=7597 Score = 208 bits (230), Expect = 1e-48 Identities = 420/619 (68%), Gaps = 8/619 (1%) Strand=Plus/Minus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||| || ||||| |||||||||||||| || || || ||| || ||||| || || || Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAA 48255 | |||||||| || ||||| ||||| | |||||| |||| || |||| | || || | Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGA 3956 Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GT 48312 | ||||| || || ||| || || || | | ||| || | || ||| | Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAA---GGATTCTGAGC 3899 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 || |||||| | | ||||| | || ||||| | || ||||| || || || || | Sbjct 3898 CGTCTATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTG 3839 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | | |||||| || || || ||| ||| |||| ||| || || | | ||||||| Sbjct 3838 CGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTAT 3779 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 |||| |||||||||||||| || || || || ||||| || || ||| | || || | Sbjct 3778 ACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGG 3719 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 | ||| |||||| | || || | || | |||||| || || ||||| || Sbjct 3718 AAACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAG 3659 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | ||||| || || | || || ||||||| | | ||| | || || ||||| | || Sbjct 3658 CGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCC 3599 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 | | | |||| || | ||| ||||| || || ||||| || || ||||| || | Sbjct 3598 ACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCT 3539 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732 | || ||||| | ||| || ||| ||||||||||||||| ||| ||||||| || | Sbjct 3538 TCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGT 3479 Query 48733 TTTTTGCAAGGATAGGTTC 48751 || || |||| ||| || Sbjct 3478 TTGGGGCCAGGAGAGGCTC 3460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692742353167200