Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03]
221,855 sequences; 236,770,010 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq34486 208 1e-48
>seq34486
Length=7597
Score = 208 bits (230), Expect = 1e-48
Identities = 420/619 (68%), Gaps = 8/619 (1%)
Strand=Plus/Minus
Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196
||| || ||||| |||||||||||||| || || || ||| || ||||| || || ||
Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015
Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAA 48255
| |||||||| || ||||| ||||| | |||||| |||| || |||| | || || |
Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGA 3956
Query 48256 AGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GT 48312
| ||||| || || ||| || || || | | ||| || | || ||| |
Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAA---GGATTCTGAGC 3899
Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372
|| |||||| | | ||||| | || ||||| | || ||||| || || || || |
Sbjct 3898 CGTCTATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATTG 3839
Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432
| | |||||| || || || ||| ||| |||| ||| || || | | |||||||
Sbjct 3838 CGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTAT 3779
Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492
|||| |||||||||||||| || || || || ||||| || || ||| | || || |
Sbjct 3778 ACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCGG 3719
Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552
| ||| |||||| | || || | || | |||||| || || ||||| ||
Sbjct 3718 AAACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAAG 3659
Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612
| ||||| || || | || || ||||||| | | ||| | || || ||||| | ||
Sbjct 3658 CGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCCC 3599
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
| | | |||| || | ||| ||||| || || ||||| || || ||||| || |
Sbjct 3598 ACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCT 3539
Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732
| || ||||| | ||| || ||| ||||||||||||||| ||| ||||||| || |
Sbjct 3538 TCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAGGGT 3479
Query 48733 TTTTTGCAAGGATAGGTTC 48751
|| || |||| ||| ||
Sbjct 3478 TTGGGGCCAGGAGAGGCTC 3460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692742353167200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |