Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq34486 154 2e-32 seq19857 87.8 3e-12 seq113474 86.0 9e-12 seq60807 84.2 3e-11 >seq34486 Length=7597 Score = 154 bits (170), Expect = 2e-32 Identities = 402/608 (66%), Gaps = 20/608 (3%) Strand=Plus/Minus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 ||| || ||||| ||||||||||| || || || || ||| || ||||| || || || Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAA 46744 | || |||| || ||||||||||| | |||||| || | || |||| | || || | Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTGA-GCAAAAGCTTCCGGAGA 3956 Query 46745 AGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT 46804 | ||||| || || || ||||| || || | | ||| || | || ||| | Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAA---GG----ATTCT 3903 Query 46805 GA-------ATCCACCTTTGAG--CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 || ||||| || ||| |||| | || || || | || ||||| || || | Sbjct 3902 GAGCCGTCTATCCA--TTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCT 3845 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | || || | |||||| || || || | ||| |||| || || || | | | Sbjct 3844 CGATTGCGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGA 3785 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 |||||||||| || || ||||| || || || || || ||||| || || ||| | | Sbjct 3784 GACTATACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGG 3725 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035 | || | || ||| ||||| | || || | | | |||||| || || |||| Sbjct 3724 CCTCGGAAACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCAT 3665 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 | ||| ||||| || || | || || ||||||| | | |||||||| || |||| Sbjct 3664 CTGAAGCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTT 3605 Query 47096 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | ||| | | |||| || | ||| ||||| || || |||||||| || |||| Sbjct 3604 TTTCCCACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCT 3545 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 | || || || ||||| | ||| || ||| | |||||||| || || ||| ||||||| Sbjct 3544 CAGCCTTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTAT 3485 Query 47216 TTGGATTT 47223 || ||| Sbjct 3484 CAGGGTTT 3477 >seq19857 Length=23048 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||| | ||||| | |||| | || | || |||||| | ||| || Sbjct 1767 ACCTCCTTGTTCCACATAACGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACC 1708 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||| || ||||||||||||| ||| || || || |||||| Sbjct 1707 ATTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGA 1648 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || || ||||| || ||| ||| |||||| || | || ||||| || Sbjct 1647 AAGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGGTATCATAAAT 1588 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || || || | || ||||| | | ||||||||| Sbjct 1587 GCCTTCAATGCTGTATTCTTTCATGCACACCAAGAAACAGCTA 1545 >seq113474 Length=757 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| ||||| | |||| | || | || |||||| | ||| || Sbjct 167 CCTCCTTGTTCCACATAAGGAGCAGTATCATTAAATACCCGCAGCATTGGCACAATACCA 226 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| || ||||||||||||| ||| || || || |||||| Sbjct 227 TTGGATGTCCCATTTGTACCTCGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAA 286 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || || ||||| || ||| ||| |||||| || | || ||||| ||| Sbjct 287 AGACCAATCCCTCCAGCTGATTTGCTGATATCAGCACATTCCTTAAGGGTATCATAAATG 346 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || || || ||||| | | ||||||||| Sbjct 347 CCTTCAATGCTGTCTTCTTTCATGCACACCAAGAAACAGCTA 388 >seq60807 Length=868 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 76775 GCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCA 76834 ||||||| |||| | || | | |||||| | ||| || || ||||| |||||||| || Sbjct 9 GCAGTGTCATTAAATACCCGGAGCATTGGCACAATACCATTGGATGTGCCATTTGTACCT 68 Query 76835 GAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATT 76894 ||||||||||||| ||| || || || |||||| || || || ||||| || | Sbjct 69 CGAATATAACTTCCAGTTGCTCGGATGTTGTGAATAGAAAGACCAATCCCTCCAGCTGAT 128 Query 76895 TTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATC 76954 || ||| |||||| || | || ||||| |||||| | || || || || || Sbjct 129 TTGCTGATATCAGCACATTCCTTAAGAGTATCATAAATGCCCCCAATGCTGTCTTCTTTC 188 Query 76955 ATGTTAAGAAGAAAACAGCTA 76975 ||| | | ||||||||| Sbjct 189 ATGCACACCAAGAAACAGCTA 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710957299233600