Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq34486 134 1e-26 >seq34486 Length=7597 Score = 134 bits (148), Expect = 1e-26 Identities = 391/598 (65%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 ||| || ||||| |||||||| || || || ||||| |||||| || || || || || Sbjct 4074 TAAGCAGGCAAAGTCACAATGAAGACCCTCGTCCCTCGAAATCAACTCGTTCGAGAAGGT 4015 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAA 23623 ||| || |||| ||| || || ||||| | |||||| |||| |||||| | | ||||| | Sbjct 4014 TAAACCGGGCAATAAACCACGCTTTTTTAACCAAAAAATTG-AGCAAAAGCTTCCGGAGA 3956 Query 23624 AGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAAT 23683 | || || |||||||| || || || || | ||| | || | ||| | | Sbjct 3955 AAAATATTCCCTCAACGCAAGCGAAAGCAACCAAACGCTCGGCGAAGG----ATTCTGAG 3900 Query 23684 CAGAA-ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATT 23742 | | ||||||| | ||| || || ||| || || || || || || ||| Sbjct 3899 CCGTCTATCCATTGGAGGGCCCACTTGGCTTTCTTTTCCACGCAAGGGATGGTCTCGATT 3840 Query 23743 GCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | ||||| || || | ||| | || || || || | || | |||| Sbjct 3839 GCGTGAAAGAGCCTGTGCTTCTCGTTGGAATCCTTAATGTACGTCTCCAACAGGAGACTA 3780 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 ||||| || || |||||||| || || || || ||||| ||||| ||| | || || Sbjct 3779 TACATCTCGGAGTGAATATTCTCGATGGCTATTTGAAAACCATAGAAAGCACGGGCCTCG 3720 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 || | || || || || | || | || | ||| || |||||| ||||| | Sbjct 3719 GAAACCTGGACCTCCTTCATGAAACGACCGGCGAGATTCTCCAGAACAATGCCATCTGAA 3660 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTC 23982 || |||||||| |||||||| | | ||||| |||| |||||| | | | ||||| | Sbjct 3659 GCGGCAAAGAAGGCAAGAACGTGAGTAATAAAGTGTCGTTCATCGGGGGTAAGTTTTTCC 3600 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 || | || |||| || | ||| ||||| || | ||||| || ||| || Sbjct 3599 CACTGGGAAACATCTACAGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAAGCCTCAGCC 3540 Query 24043 CGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATCAG 24100 ||| ||||| |||||| ||| | ||| ||||| || || ||||||||||| Sbjct 3539 TTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGAACATACAGAATCTATCAG 3482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520041815997000