Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asclepias_20syriaca_20[genbank_20GCA_5F002018285.1_202017-03-03] 221,855 sequences; 236,770,010 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq42083 122 8e-23 seq4370 118 1e-21 seq24190 116 3e-21 seq23310 109 5e-19 seq53181 89.7 5e-13 seq31910 87.8 2e-12 seq31911 82.4 7e-11 >seq42083 Length=68989 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | || ||||||||||||| || ||||||||| |||||||| || | Sbjct 15134 CCACCGCGCAAGCGCAACACCAGATGCAAGGTTGACTCCTTCTGGATGTTATAATCAGCT 15193 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| |||||||||||||||||||| || || ||||| || || | || Sbjct 15194 AGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGATCTGGCGGG 15253 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || || | || | | | || ||| ||||| || Sbjct 15254 ATGCCCTCCTTATCC-TGTATCTTAGCCTTGACATTGTCAATGGTATCGGAGGACTCAAC 15312 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || ||||| || || || || ||||| |||||||| || Sbjct 15313 CTCCAAAGTAATGGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 15363 >seq4370 Length=4242 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| | Sbjct 2308 CCACCACGGAGACGAAGCACCAAATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2367 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || ||||| ||||| || |||| | ||| ||||| | |||| Sbjct 2368 AGGGTGCGACCATCTTCCAGTTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2427 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | || ||||| ||| |||||| ||||| | | || | |||| |||| || Sbjct 2428 ATGCCTTCCTTATCCTGGATTTTGGCCTTCA-CATTGTCAATGGTGTCTGAGCTC---TC 2483 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 2484 CACCTCCAAAGTGATAGTCTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 2534 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| || |||| Sbjct 2536 CCACCACGGAGACGGAGCACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAATCGGCC 2595 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || ||||| ||||| || |||| | ||| ||||| | |||| Sbjct 2596 AGGGTACGACCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGCTGGTCTGGGGGA 2655 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGA---CTC 41811 | || ||||| ||| ||| || ||||| || | || ||||| ||| ||| Sbjct 2656 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATCGTGTC---CGAGCTCTC 2711 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || ||||| || ||||| || || || ||||| Sbjct 2712 CACCTCCAAAGTAATAGTCTTGCCCGTGAGAGTCTTGACAAATATTTGCAT 2762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| ||||| || ||||| ||||||| ||||| ||| | || ||| Sbjct 2782 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTCCGCCCATCTTCG 2841 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | || ||||| | |||| | |||||| ||| || Sbjct 2842 AGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGAATTCCCTCCTTATCC-TG 2900 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 |||| |||| ||| | | || || ||| ||||||||||| || || || Sbjct 2901 GATTTTAGCTTTCACGTTATCGATGGTATCTGAGCT---CTCCACCTCCAAAGTGATGGT 2957 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || ||||| ||||| ||||||||| Sbjct 2958 CTTCCCCGTGAGAGTCTTGACGAAGATCTGCATG 2991 >seq24190 Length=3131 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||||| || ||||||||| ||||| || || | Sbjct 1480 CCACCGCGCAGACGGAGAACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAATCCGCT 1421 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || ||||||||||| |||||||| || || ||||| || || | ||| Sbjct 1420 AGGGTCCTGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCTGGTGGA 1361 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || |||| || | || | | | |||||| || || || Sbjct 1360 ATTCCTTCCTTGT-CTTGGATTTTAGCCTTGACATTGTCAATGGTGTCGGAGGATTCAAC 1302 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || |||||||| || || || ||||| |||||||| || Sbjct 1301 CTCCAGAGTAATTGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATCTT 1251 >seq23310 Length=1212 Score = 109 bits (120), Expect = 5e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||| || || || |||||||| | ||||| || | |||||| Sbjct 498 ACAAGGTGGAGGGTGGACTCTTTTTGGATATTATAGTCAGCAAGGGTTCGTCCATCGTCG 557 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| ||||| ||||| ||||| || || | |||| || ||||||||| || Sbjct 558 AGCTGTTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCC-TG 616 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || || | ||| | | | |||||| ||| |||||| |||| || || || Sbjct 617 AATCTTGGCCTTAACATTGTCAATAGTGTCTGAGCT---CTCCACTTCCAAAGTAATGGT 673 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||| ||||| ||||| ||||||||| Sbjct 674 CTTCCCAGTCAATGTCTTCACGAATATCTGCATG 707 >seq53181 Length=15488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | ||||| | || || || || ||| ||||||||||||||| || || | Sbjct 5291 CGCCACCTCTAAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCAG 5350 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| | || || || ||||| || || || || || | ||| || |||| || Sbjct 5351 CAAGGGTGCGCCCATCCTCTAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGGG 5410 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTC---GCTCGAC 41809 ||| | |||||||||| ||| | || | ||||| | ||||| ||| | Sbjct 5411 GAATCCCCTCCTTGTCC-TGAATCTTGGACTTCACATTATCTATGGTGTCTGAGCT---C 5466 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || | || || || || || |||| ||||| || ||||||||||| Sbjct 5467 TCTACTTCAAGTGTAATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 5519 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || ||||| || || ||||||||||||||| ||||||| Sbjct 5977 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCC 6036 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || | |||||| |||||||| |||| |||||| || || | ||| Sbjct 6037 AAAGTTCTGCCGTCTTCCAACTGCTTACCGGCGAAGATCAAGCGCTGCTGATCAGGAGGA 6096 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| | || || | |||| | | | ||| || || || Sbjct 6097 ATTCCTTCCTTATCC-TGAATCTTAGCCTTAACGTTGTCGATAGTATCAGAACTTTCGAC 6155 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| ||||| || || || || || || || ||||| Sbjct 6156 TTCCAAGGTGATCGTCTTACCGGTGAGGGTTTTGACAAATATTTGCAT 6203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || ||||| || ||| |||||||||||| ||||| |||| Sbjct 6433 CCGCCACGGAGTCGGAGAACAAGATGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 6492 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || ||||| ||||| || ||||| || |||| || Sbjct 6493 AGTGTACGGCCGTCCTCAAGCTGTTTACCGGCAAATATGAGACGCTGCTGATCCGGAGGG 6552 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 6553 ATGCCTTCCTTGTC 6566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || ||||| | || ||||||||| || ||||| |||| Sbjct 5749 CCACCGCGAAGCCTCAAGACGAGATGTAAGGTAGACTCCTTCTGGATATTATAATCGGCC 5808 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | ||| | | |||| || | |||||| ||||| || ||||||||||| || || | ||| Sbjct 5809 AAGGTTCTCCCGTCTTCCAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGG 5868 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||||||| ||| | || || | |||| | | | || || ||| | Sbjct 5869 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTCTCGA 5926 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || ||||| || || || || || || || ||||| Sbjct 5927 CTTCCAAGGTAATAGTCTTACCTGTGAGAGTTTTGACAAATATTTGCAT 5975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || ||||| || || |||||||||||| || || |||| Sbjct 6205 CCACCGCGGAGCCTCAAAACAAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 6264 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || | ||||| |||||||| || || | ||| || || | ||| Sbjct 6265 AACGTTCTGCCGTCTTCCAATTGCTTACCGGCGAAGATAAGTCTCTGCTGATCAGGAGGA 6324 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | |||| | | | || || ||| || Sbjct 6325 ATTCCCTCCTTGTCC-TGAATCTTCGCCTTAACGTTGTCGATGGTATCTGAACTCTCGAC 6383 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| ||||| || || || || ||||| |||||||| Sbjct 6384 CTCGAGAGTGATCGTCTTACCGGTTAGGGTTTTAACGAAGATCTGCAT 6431 >seq31910 Length=2189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| | || || || | || || |||||||| || || || Sbjct 1078 TCCTTCTGAATGTTGTAGTCTGCAAGAGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAG 1137 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | ||||| | ||||||||| ||| | || || | || Sbjct 1138 ATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC-TGAATCTTGGCCTTCACATT 1196 Query 41792 GACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | || | || | ||| ||||||||||| ||||| || || || || || || || Sbjct 1197 GTCA-ATGGTATC-CGAGCTCTCCACCTCCAATGTTATGGTCTTCCCGGTGAGGGTTTTC 1254 Query 41849 ACGAAAATCTGCATG 41863 |||||||| |||||| Sbjct 1255 ACGAAAATTTGCATG 1269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| ||||| | ||||| || | || || |||||||| || || || Sbjct 850 TCCTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCAAGCTGCTTTCCAGCAAAG 909 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | ||||| || ||||| ||| ||| | || || | || Sbjct 910 ATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC-TGAATCTTGGCCTTCACATT 968 Query 41792 GACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | || | ||| | ||| ||||||||| | |||| ||||| || || || || || Sbjct 969 GTCA-ATTGTATC-CGAGCTCTCCACCTCTAGTGTTACGGTTTTCCCAGTGAGAGTTTTC 1026 Query 41849 ACGAAAATCTGCAT 41862 || || |||||||| Sbjct 1027 ACAAATATCTGCAT 1040 >seq31911 Length=2244 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || || || ||||||||||| ||||| | ||||| || | || || Sbjct 1069 ACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAGTCTGCAAGGGTCCGTCCATCTTCA 1128 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | ||| ||||| | ||||| | ||||| ||| || Sbjct 1129 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATACCTTCCTTATCC-TG 1187 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGTT 41830 | || || | ||| | || | || | ||| ||||||||||| ||||| || Sbjct 1188 TATCTTGGCCTTAACATTGTCA-ATGGTATC-CGAGCTCTCCACCTCCAATGTTATGGTC 1245 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || |||||||| ||||| Sbjct 1246 TTCCCGGTGAGGGTTTTCACGAAAATTTGCAT 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461021944326000