Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq18882 132 6e-26 seq20901 127 2e-24 seq22035 93.3 5e-14 seq18338 82.4 9e-11 >seq18882 Length=869960 Score = 132 bits (146), Expect = 6e-26 Identities = 397/609 (65%), Gaps = 8/609 (1%) Strand=Plus/Plus Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 || ||| || || || ||||||||||| |||||||| |||| || || ||||| | Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT- 24242 | || || | ||| ||||||| || |||||||| ||||||||||| | |||||| | Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA---CCG 24299 || || |||||||| || || || ||||| || || | ||| || | || | Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390 Query 24300 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 | || ||| ||||| ||| ||||| ||| |||||| || || || | || Sbjct 814391 GAGCCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTT 814447 Query 24360 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 24419 || || || | ||||||| || ||||| | | ||| | || || || | | Sbjct 814448 TCGATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGC 814507 Query 24420 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 24479 || |||||||| || || ||||| |||||||| ||||| || |||||||| | Sbjct 814508 AGCGAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGC 814567 Query 24480 GCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 ||||||| | ||| || || | || | | || | || || || || ||| Sbjct 814568 GCCTCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCG 814627 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 || ||| || || || || | || || | | || | || ||||| | ||||| Sbjct 814628 TCGGAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 814687 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 | ||| | || ||||| || | ||| ||||| || | |||||||| || || Sbjct 814688 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCT 814747 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || || || || ||||| | ||| || | | || ||||| || || ||| ||||| | Sbjct 814748 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGA 814807 Query 24720 TTTGGATTT 24728 | |||||| Sbjct 814808 TCGGGATTT 814816 >seq20901 Length=225483 Score = 127 bits (140), Expect = 2e-24 Identities = 387/589 (66%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || ||||||| |||| ||||| || | Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 70724 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCG 24302 || || || || ||||| || ||||| || || ||||| || | || | | | | Sbjct 70725 GAGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 70784 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| ||||| ||| | |||||||||||||| | || || |||| || || Sbjct 70785 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCA 70841 Query 24363 ATAGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATATGTATCAATCAAAA 24420 | || ||| | | | ||||| | | | ||||| | || || || | | | Sbjct 70842 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGA 70899 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 | |||||||| || || ||||| || ||||| ||||| || |||||||| | | Sbjct 70900 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 70959 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||||| | || |||||| | || | | || | ||||| || ||||| | Sbjct 70960 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCAT 71019 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 24600 | ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 71020 CCGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGG 71079 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||| | ||| || | || | || || || ||| | ||||||||||| || | Sbjct 71080 ATTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTT 71139 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 | || || || ||||| | |||||| || | || || |||||||| || Sbjct 71140 CGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188 >seq22035 Length=61329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | || ||||| || || ||||||||| || ||| | | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | |||||| || || || || | ||| || | || || || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCA 54602 ||| || ||||||||||| || | ||| | || | |||| | |||||| | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || |||||||| | || ||| || || ||||| ||||| Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| ||||| | || | || || | |||| | || | || |||||| | ||||||| Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286 Query 54245 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 || |||| ||||| || ||| || ||||| ||||| | |||||||| || || ||| Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGA-ATATAACTTCCTGTCGCACGAATGTTGTGAACTGA 17227 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 17226 GACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATAT 17167 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 17166 TCCTTCAATACTATCATCTTTCATG 17142 >seq18338 Length=6336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 2256 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 2197 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| || || || || ||||| |||||| | |||||||| || || || Sbjct 2196 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGAG 2137 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 2136 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 2077 Query 54365 CCCTCTATACTATCATCCATCAT 54387 || || ||||||||||| |||| Sbjct 2076 CCTTCAATACTATCATCTTTCAT 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593531609088000