Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq23635 116 6e-21
seq18598 109 8e-19
seq5785 93.3 6e-14
>seq23635
Length=3246295
Score = 116 bits (128), Expect = 6e-21
Identities = 112/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106
||||| || || || || | ||||| || | || || || ||| || || ||||||||
Sbjct 165768 GTTCCTCCCCTCAGCCTCAGGACCAAGTGAAGTGTCGACTCCTTTTGA-ATGTTATAATC 165710
Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166
|| ||| ||||||| ||| || || ||||| ||||||||||||||||| |||||||||||
Sbjct 165709 TGCAAGCGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGG 165650
Query 146167 AGGAATTCCTTCTTTATCTTG 146187
|||||| ||||| || || ||
Sbjct 165649 AGGAATGCCTTCCTTGTCCTG 165629
>seq18598
Length=1475942
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || || || | ||||| || | || || || || || ||||||||
Sbjct 1159335 GTTCCGCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 1159276
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||||| || ||| || || ||||| ||||||||||||||||| ||||||||||||
Sbjct 1159275 GCAAGAGTTCGGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGA 1159216
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| ||||| || || ||
Sbjct 1159215 GGAATGCCTTCCTTGTCCTG 1159196
>seq5785
Length=266748
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| || | ||||| || |||||||| || || ||||| || || || || ||||
Sbjct 165615 TTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTG 165674
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||| || || | ||| || | || || || ||||||||||| || |||||||| || |
Sbjct 165675 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTG 165734
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||| ||||| ||||||||
Sbjct 165735 GAATGCCTTCCTTATCTTG 165753
Score = 89.7 bits (98), Expect = 8e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| || | ||||| || |||||||| || || ||||| || || || || ||||
Sbjct 166888 TTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTG 166947
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||| || || | ||| || | || || || ||||||||||| || |||||||| || |
Sbjct 166948 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTG 167007
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||| || || ||||||||
Sbjct 167008 GAATGCCCTCCTTATCTTG 167026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743288471552000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |