Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq23635 116 6e-21 seq18598 109 8e-19 seq5785 93.3 6e-14 >seq23635 Length=3246295 Score = 116 bits (128), Expect = 6e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || | ||||| || | || || || ||| || || |||||||| Sbjct 165768 GTTCCTCCCCTCAGCCTCAGGACCAAGTGAAGTGTCGACTCCTTTTGA-ATGTTATAATC 165710 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| ||||||| ||| || || ||||| ||||||||||||||||| ||||||||||| Sbjct 165709 TGCAAGCGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGG 165650 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 165649 AGGAATGCCTTCCTTGTCCTG 165629 >seq18598 Length=1475942 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | ||||| || | || || || || || |||||||| Sbjct 1159335 GTTCCGCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 1159276 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || || ||||| ||||||||||||||||| |||||||||||| Sbjct 1159275 GCAAGAGTTCGGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGA 1159216 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 1159215 GGAATGCCTTCCTTGTCCTG 1159196 >seq5785 Length=266748 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| || || ||||| || || || || |||| Sbjct 165615 TTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTG 165674 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || |||||||| || | Sbjct 165675 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTG 165734 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| |||||||| Sbjct 165735 GAATGCCTTCCTTATCTTG 165753 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| || || ||||| || || || || |||| Sbjct 166888 TTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTG 166947 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || |||||||| || | Sbjct 166948 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTG 167007 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || || |||||||| Sbjct 167008 GAATGCCCTCCTTATCTTG 167026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743288471552000