Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5785 105 5e-18 seq23635 95.1 9e-15 seq4300 87.8 1e-12 seq18598 86.0 5e-12 >seq5785 Length=266748 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | |||||||| ||||| |||||||| || || ||||||||||| || Sbjct 171680 CCCCCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCA 171739 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||||||||| ||| |||| || ||||| || || || Sbjct 171740 AGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 171799 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| ||||| | |||| | | || ||| |||| ||| || || Sbjct 171800 ATCCCTTCCTTATCCTGAATTT-TGGCTTTAACATTGTCAATGGTGT--CCGAGCTTTCC 171856 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || || || | || |||||||| |||||||| Sbjct 171857 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 171906 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||| || |||||||||||||| || Sbjct 166301 CCACCACGAAGACGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCA 166360 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || ||| | || ||||| || || || || Sbjct 166361 AGGGTACGACCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGG 166420 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| ||||| |||||| | ||| || ||| ||| | Sbjct 166421 ATGCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACT 166480 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| |||| || || | ||||| ||||| || |||||| Sbjct 166481 TCCAAGGTGATAGTTTTACCAGTGAGAGTTTTCACAAAGATCTGCATT 166528 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||| || |||||||||||||| || Sbjct 167574 CCACCACGAAGACGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCA 167633 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || ||| | || ||||| || || || || Sbjct 167634 AGGGTACGACCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGG 167693 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| ||||| |||||| | ||| || ||| ||| | Sbjct 167694 ATGCCCTCCTTATCCTGAATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACT 167753 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| |||| || || | ||||| ||||| || |||||| Sbjct 167754 TCCAAGGTGATAGTTTTACCAGTGAGAGTTTTCACAAAGATCTGCATT 167801 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || ||||| || || || ||||||||||| || | ||| | |||| Sbjct 171467 AGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCTAGAGTTCGGCCATCT 171526 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| |||| | ||| || ||||| || | ||||||||| || Sbjct 171527 TCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCC 171586 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | ||| |||||| | || || | || || || Sbjct 171587 TGAATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTT 171646 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| |||||||| ||||| Sbjct 171647 TTACCGGTAAGGGTTTTCACAAAAATCTGCAT 171678 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || ||||||||||||||||| Sbjct 167346 CCACCACGAAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCA 167405 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || ||| ||||||| || || || || || Sbjct 167406 AGGGTACGACCATCTTCTAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGG 167465 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | |||| | | || ||| ||| || ||| Sbjct 167466 ATGCCTTCCTTGTCTTGAATCT-TAGCTTTAACATTGTCAATAGTATCCGAACTCTCAAC 167524 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| | ||||| || | || || ||||| |||||||| Sbjct 167525 TTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 167572 >seq23635 Length=3246295 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| ||||||||| || || ||||||||||| || || || Sbjct 165766 TCCTCCCCTCAGCCTCAGGACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAATCTGC 165707 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||| ||||| || ||| | || | ||| || |||||| || Sbjct 165706 AAGCGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGG 165647 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 165646 AATGCCTTCCTTGTC 165632 >seq4300 Length=903212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | |||||| ||||| ||||| || ||||||||||| ||| Sbjct 755899 CCTCCACGGAGGCGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCAGCC 755840 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | || | |||||||||||||| || ||| |||| | |||||||||||| Sbjct 755839 AACGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAGATCAATCTTTGTTGATC 755787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | ||| || | ||| || ||||| ||||| ||||||||||| |||||| Sbjct 740730 CCTCCCCTGAGGCGAAGAACAAGGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCGGCC 740671 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | || || ||||||||| || || || ||| |||| | |||||| || ||| Sbjct 740670 AAGGTGCGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGCTGGTCC 740617 >seq18598 Length=1475942 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| |||||||||||| || || |||||||| || || || Sbjct 1159333 TCCGCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGC 1159274 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||||||||| ||||| || ||| | || | ||| || |||||| || Sbjct 1159273 AAGAGTTCGGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGG 1159214 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 1159213 AATGCCTTCCTTGTC 1159199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379225644672000