Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18882 147 3e-30 seq20901 145 1e-29 seq22035 98.7 1e-15 >seq18882 Length=869960 Score = 147 bits (162), Expect = 3e-30 Identities = 405/617 (66%), Gaps = 8/617 (1%) Strand=Plus/Plus Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 || ||| || || || ||||||||||| |||||||| |||| || || ||||| | Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT- 33689 | || || | ||| ||||||| || |||||||| ||||||||||| | || || | Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCG 33746 || || ||||| || || || || |||||| || || | |||||| | || | Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390 Query 33747 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | || ||| ||||| ||| ||||| ||| |||||| || || || | |||| Sbjct 814391 GAGCCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTT 814447 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || ||||| | ||||||| || ||||| | | ||| | ||||| || | | Sbjct 814448 TCGATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGC 814507 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 || |||||||| || || ||||| |||||||| || || || |||||||| | Sbjct 814508 AGCGAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGC 814567 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 ||||||| | ||| || || || || | | || | || || || || || Sbjct 814568 GCCTCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCG 814627 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 34046 || ||| || || || || | || || | | || | || ||||| | ||||| Sbjct 814628 TCGGAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 814687 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 | ||| | || ||||| || | ||| ||||| || | |||||||| || || Sbjct 814688 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCT 814747 Query 34107 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || || || || ||||| | ||| || | | || || || ||||| ||| ||||| | Sbjct 814748 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGA 814807 Query 34167 TTTGGATTTGGTGCAAG 34183 | |||||||| || || Sbjct 814808 TCGGGATTTGGGGCTAG 814824 >seq20901 Length=225483 Score = 145 bits (160), Expect = 1e-29 Identities = 389/588 (66%), Gaps = 10/588 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || ||||||| |||| ||||| || | Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCG 70725 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGC 33750 | || || || ||||| || |||||| || || |||||||| | || | | | || Sbjct 70726 AGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 70785 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| ||| | |||||||||||||| | || || |||| |||||| | Sbjct 70786 CGTC---GATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCAA 70842 Query 33811 TGGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||| ||| | | | ||||| | | | ||||| | || || || | | || Sbjct 70843 AGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGAG 70900 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 |||||||| || || ||||| || ||||| || || || |||||||| | || Sbjct 70901 CGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGC 70960 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 70961 CTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCATC 71020 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 71021 CGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGA 71080 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 71081 TTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTC 71140 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || ||||| | |||||| || | || |||||||| || || Sbjct 71141 GGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188 >seq22035 Length=61329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | || ||||| || || ||||||||| || ||| | | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||| || | || || || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| || ||||||||||| |||| ||| | | ||||| | |||||| | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 16802 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || |||||||| | || ||| || || ||||| ||||| Sbjct 16801 GGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629616058368000