Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq18338 100 3e-16 seq18882 91.5 1e-13 >seq18338 Length=6336 Score = 100 bits (110), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 1951 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1892 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||||||| || | ||| |||||| | ||| Sbjct 1891 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCGGAATCAATATCATCCTTGTG 1832 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || || ||||||| Sbjct 1831 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGCCTTTCTA 1788 >seq18882 Length=869960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 297/455 (65%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||||||| | |||||| ||| || ||||||||||| |||| || || || Sbjct 813931 CTTTTGATATTCCCCAACTCGCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATTAG 813990 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||||||||| ||| | | | || | | || | | | || Sbjct 813991 CTCCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAA 814050 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || ||||| ||||| || ||||| |||||| ||| || | |||||| || | | Sbjct 814051 CAACCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 814110 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | ||| | ||| | || |||||| | ||||| | ||||| || | | || Sbjct 814111 CGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 814170 Query 11578 CGACGTTATAACTTCCT----TAGATGGTGGATGT-AATAAATGTTTAAACATTAAACAC 11632 || | | | |||| ||| | | | | |||||| || ||| | ||| Sbjct 814171 CGCCTTCACGCGCTCCTCGCTTAGCT--TCGTCCTCAATAAAC---TATACAACAGGCAC 814225 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||| || || | ||| || |||| || | || || || ||||||||||| Sbjct 814226 GCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCC 814285 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA---CCAGAAAAGAAT 11749 ||||| || ||||| ||||| | ||||||||| || ||||| || || || ||||| Sbjct 814286 GGCATTAACCCTCGCTTTTTGAGCCAAAATATCGC-GCAAA--AACTCCCTGAGAAGAAA 814342 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 || |||||||| ||||| || | || ||| || Sbjct 814343 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTC 814377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468374872064000