Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4300 109 5e-19 seq5785 107 2e-18 seq3274 107 2e-18 seq23635 87.8 2e-12 seq16041 86.0 6e-12 seq3592 86.0 6e-12 >seq4300 Length=903212 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 191544 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 191485 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| |||||||| || || || ||||||| || ||||| || || || Sbjct 191484 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 191425 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 191424 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCAC 191365 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| |||||||| || || ||||| Sbjct 191364 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTTACAAAGATCTGCAT 191317 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| |||||| || |||| ||||||||| || || || Sbjct 818132 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCG 818073 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||| |||||||| || ||||| ||||| ||| || || Sbjct 818072 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 818013 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | |||||| ||||| | ||| Sbjct 818012 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 817953 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 817952 TTGACGAAGATCTGCAT 817936 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||||||||| |||||| || |||| ||||||||| || || || Sbjct 850554 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 850495 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || || || ||||| ||| || || Sbjct 850494 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 850435 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | |||||| || | ||| | ||||||||||| | ||| Sbjct 850434 ACGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 850375 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 850374 TTCACAAATATCTGCAT 850358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| |||||| | || | || |||||||| || || Sbjct 191969 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 191910 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| || || |||||||| ||| | || | || Sbjct 191909 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCC-TGAATCTTCGCCTT 191851 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||| | || | |||||| ||||||||||| Sbjct 191850 CACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCGGTCAACGT 191791 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 191790 CTTGACGAAGATCTGCAT 191773 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||||||||| ||| | || | ||| || ||||| || || Sbjct 741156 GTGGACTCCTTTTGAATGTTATAATCAGCT-AAAGTACGGCCGTCCTCAAGCTGCTTCCC 741098 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| | Sbjct 741097 AGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 741039 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | || || | | ||||||||| | || | ||||| || ||||| | Sbjct 741038 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 740979 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || ||||| |||||| Sbjct 740978 TCTTGACAAATATCTGCATA 740959 >seq5785 Length=266748 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||| || || || || || ||||| || | ||||| || ||| Sbjct 243590 ACCAAGTGGAGCGTTGATTCCTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCG 243649 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||||| || || || ||||| ||||| | Sbjct 243650 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 243709 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||||| | || ||||||| ||| | |||||| Sbjct 243710 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 243769 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 243770 CCGGTGAGAGTTTTCACAAAGATTTGCAT 243798 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || |||||||||||| | ||||| | || || Sbjct 171926 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 171985 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | ||||| || || || || ||||| ||||| | Sbjct 171986 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGG 172045 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | ||||||| | || ||||||| ||| | || || Sbjct 172046 ATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTTTTT 172105 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || |||||||| Sbjct 172106 CCAGTGAGAGTCTTCACAAAGATTTGCAT 172134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||||||||| Sbjct 243344 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 243403 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||||||||| ||| |||| || | ||||| || || || Sbjct 243404 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 243463 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||| | | ||||| Sbjct 243464 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTTTCCAC 243522 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | || ||||| || || |||||| Sbjct 243523 CTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 243571 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| || || |||||||| || | |||| || ||| Sbjct 168048 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 168107 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||| || || || || ||||| || || | Sbjct 168108 AGCTGTTTACCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 168167 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||| | | || ||||||| ||| | |||||| Sbjct 168168 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 168227 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || |||||||| Sbjct 168228 CCAGTGAGAGTCTTAACAAAGATTTGCAT 168256 >seq3274 Length=969234 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| ||| | ||| | || || ||||| || |||||||||||| | Sbjct 910572 CCTCCACGGAGACGCAGAACAAGGTGGAGAGTTGATTCTTTCTGGATGTTATAATCGGCC 910513 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || || |||||||||| |||||||| ||||| Sbjct 910512 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 910453 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | ||| | | || | || |||| | || || Sbjct 910452 ATCCCTTCCTTATC-TTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAGCTTTCAAC 910394 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||| || || | ||||| |||||||| ||||| Sbjct 910393 CTCAAGGGTGATCGTCTTACCCGTTAGGGTTTTAACGAATATCTGCAT 910346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| ||| ||||| ||||| || || ||||| Sbjct 910117 GCCCCCACGGAGACGAAGCACGAGGTGAAGCGTCGACTCCTTTTGGATATTGTAATCAGC 910058 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| ||||| || || ||||| ||||||| | ||||| || || || Sbjct 910057 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGG 909998 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 909997 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGAC 909938 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 909937 TTCGAGGGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 909890 >seq23635 Length=3246295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| ||||||||||||||||| | || || ||||| Sbjct 165747 ACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 165688 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | ||||||||||||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 165687 AACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 165632 >seq16041 Length=904 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | |||||||||||| || || Sbjct 373 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 432 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 433 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 492 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||||||||| | || | ||||| || || | ||| Sbjct 493 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 552 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 553 TTCACGAAGATCTGCAT 569 >seq3592 Length=5743183 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | |||||||||||| || || Sbjct 5552038 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 5551979 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 5551978 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 5551919 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||||||||| | || | ||||| || || | ||| Sbjct 5551918 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 5551859 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 5551858 TTCACGAAGATCTGCAT 5551842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495905259520000