Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4300 109 5e-19
seq5785 107 2e-18
seq3274 107 2e-18
seq23635 87.8 2e-12
seq16041 86.0 6e-12
seq3592 86.0 6e-12
>seq4300
Length=903212
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||| | || | ||| | || ||||| || || ||||| |||||
Sbjct 191544 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 191485
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| | ||| |||||||| || || || ||||||| || ||||| || || ||
Sbjct 191484 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 191425
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||||||| | ||||||
Sbjct 191424 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCAC 191365
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||||||||||| |||||||| || || |||||
Sbjct 191364 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTTACAAAGATCTGCAT 191317
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||||||||| ||||| |||||| || |||| ||||||||| || || ||
Sbjct 818132 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCG 818073
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| ||||||| | ||||| |||||||| || ||||| ||||| ||| || ||
Sbjct 818072 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 818013
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| | ||| ||||| | ||| | |||||| ||||| | |||
Sbjct 818012 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 817953
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 817952 TTGACGAAGATCTGCAT 817936
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || |||||||||||||| |||||| || |||| ||||||||| || || ||
Sbjct 850554 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 850495
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| ||||| ||||| || || || || || || ||||| ||| || ||
Sbjct 850494 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 850435
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| | |||||| || | ||| | ||||||||||| | |||
Sbjct 850434 ACGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 850375
Query 139748 TTTACGAATATTTGCAT 139764
|| || ||||| |||||
Sbjct 850374 TTCACAAATATCTGCAT 850358
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| ||||||||||| |||||| | || | || |||||||| || ||
Sbjct 191969 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 191910
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || | ||||| || ||||| || || |||||||| ||| | || | ||
Sbjct 191909 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCC-TGAATCTTCGCCTT 191851
Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||||| | ||||||||| | || | |||||| |||||||||||
Sbjct 191850 CACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCGGTCAACGT 191791
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 191790 CTTGACGAAGATCTGCAT 191773
Score = 89.7 bits (98), Expect = 5e-13
Identities = 143/200 (72%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| ||||||||||||||||| ||| | || | ||| || ||||| || ||
Sbjct 741156 GTGGACTCCTTTTGAATGTTATAATCAGCT-AAAGTACGGCCGTCCTCAAGCTGCTTCCC 741098
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| |
Sbjct 741097 AGCGAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 741039
Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
|| | | || | || || | | ||||||||| | || | ||||| || ||||| |
Sbjct 741038 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 740979
Query 139746 TTTTTACGAATATTTGCATA 139765
| || || ||||| ||||||
Sbjct 740978 TCTTGACAAATATCTGCATA 740959
>seq5785
Length=266748
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | ||| || || || || || ||||| || | ||||| || |||
Sbjct 243590 ACCAAGTGGAGCGTTGATTCCTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCG 243649
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||||||||||||| |||| || | |||||||| || || || ||||| ||||| |
Sbjct 243650 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 243709
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||||| | || | ||||||| | || ||||||| ||| | ||||||
Sbjct 243710 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 243769
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||||| || || ||||||||
Sbjct 243770 CCGGTGAGAGTTTTCACAAAGATTTGCAT 243798
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || || |||||||||||| | ||||| | || ||
Sbjct 171926 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 171985
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||||||||||||| |||| || | ||||| || || || || ||||| ||||| |
Sbjct 171986 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGG 172045
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||| | | || | ||||||| | || ||||||| ||| | || ||
Sbjct 172046 ATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATGGTTTTT 172105
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | || || || || ||||||||
Sbjct 172106 CCAGTGAGAGTCTTCACAAAGATTTGCAT 172134
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || |||||||||||
Sbjct 243344 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 243403
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| || |||||||||||||| ||| |||| || | ||||| || || ||
Sbjct 243404 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 243463
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | ||| | | || | ||||| | | |||||
Sbjct 243464 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTTTCCAC 243522
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | |||||||| || | || ||||| || || ||||||
Sbjct 243523 CTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 243571
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| || |||| || ||||| || || |||||||| || | |||| || |||
Sbjct 168048 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 168107
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||||||||||||| |||| || | |||||| || || || || ||||| || || |
Sbjct 168108 AGCTGTTTACCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 168167
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||||| | || | ||||| | | || ||||||| ||| | ||||||
Sbjct 168168 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 168227
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | || || || || ||||||||
Sbjct 168228 CCAGTGAGAGTCTTAACAAAGATTTGCAT 168256
>seq3274
Length=969234
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| ||| | ||| | || || ||||| || |||||||||||| |
Sbjct 910572 CCTCCACGGAGACGCAGAACAAGGTGGAGAGTTGATTCTTTCTGGATGTTATAATCGGCC 910513
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||||| ||||| || || || |||||||||| |||||||| |||||
Sbjct 910512 AGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCAGGAGGA 910453
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| || || ||| | || | ||| | | || | || |||| | || ||
Sbjct 910452 ATCCCTTCCTTATC-TTGAATCTTGGCCTTAACATTGTCGATAGTATCGGAGCTTTCAAC 910394
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||| || || | ||||| |||||||| |||||
Sbjct 910393 CTCAAGGGTGATCGTCTTACCCGTTAGGGTTTTAACGAATATCTGCAT 910346
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || | ||||| ||| ||||| ||||| || || |||||
Sbjct 910117 GCCCCCACGGAGACGAAGCACGAGGTGAAGCGTCGACTCCTTTTGGATATTGTAATCAGC 910058
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| ||||| || || ||||| ||||||| | ||||| || || ||
Sbjct 910057 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGG 909998
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||||||| ||| ||
Sbjct 909997 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGAC 909938
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | ||||| ||||| || |||||
Sbjct 909937 TTCGAGGGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 909890
>seq23635
Length=3246295
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||||| || ||||| ||||||||||||||||| | || || |||||
Sbjct 165747 ACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 165688
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
| ||||||||||||| | |||| | |||||||| ||||| |||||||| |||||
Sbjct 165687 AACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 165632
>seq16041
Length=904
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| || || | |||||||||||| || ||
Sbjct 373 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 432
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 433 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 492
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| || ||||||||| | || | ||||| || || | |||
Sbjct 493 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 552
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 553 TTCACGAAGATCTGCAT 569
>seq3592
Length=5743183
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| || || | |||||||||||| || ||
Sbjct 5552038 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGTCCGTCTTCGAGCTGCTTGCCG 5551979
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 5551978 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 5551919
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| || ||||||||| | || | ||||| || || | |||
Sbjct 5551918 ACGTTGTCAATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 5551859
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 5551858 TTCACGAAGATCTGCAT 5551842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495905259520000
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