Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq18882 114 1e-20 seq5117 89.7 5e-13 seq20901 87.8 2e-12 >seq18882 Length=869960 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||||||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 814223 CACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 814282 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || ||||| ||||| | ||||||||| || ||| ||| || ||||| Sbjct 814283 CCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 814342 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 || ||||| || ||||||||| ||||||| Sbjct 814343 ATCCCCTCCACGCAAGCAAACGCGATTAATC 814373 >seq5117 Length=452333 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||||||||| |||||||||||| ||||| ||||| || || || || Sbjct 190495 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTCGAGAACGTCAAA 190436 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 190435 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 190393 >seq20901 Length=225483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || || |||| || || |||||||| || ||| Sbjct 70611 AAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGAAGGTT 70670 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||||||||||||||| |||| || || || || | Sbjct 70671 AGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCCGAGA 70728 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 | ||||| || || || |||||||||||| | || ||||| Sbjct 70729 AAAATATCCCTTCCACGCAAGCAAACGCTATCAGTC--TCTCC 70769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479574487040000