Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq5785 102 6e-17 seq4300 87.8 1e-12 >seq5785 Length=266748 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| || |||||| || | ||||| || | Sbjct 171452 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCT 171511 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||||||||| ||||| ||||||| ||| ||||| | || Sbjct 171512 AGAGTTCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGG 171571 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | ||||| || || |||| || | ||||| || ||| |||||| ||| | | | Sbjct 171572 ATGCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCAATTGTGTCAG-AGCTTTCAA 171629 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 171630 CCTCCAAAGTTATAGTTTTACCGGTAAGGGTTTTCACAAAAATCTGCAT 171678 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||||||| ||||||||||| | ||| ||||| || | ||||| || | Sbjct 165617 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGCA 165676 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || ||||| ||||||||||| | ||| ||||| | || Sbjct 165677 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 165736 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | ||| ||||| | ||| || Sbjct 165737 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAACTCTCTACC 165796 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| ||||||||||||||||| Sbjct 165797 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 165843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || |||||| || | ||||| || | Sbjct 242888 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCA 242947 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||||||||||||| || || | ||||||||| | || Sbjct 242948 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 243007 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || | | |||||| ||| || || Sbjct 243008 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTC-AGAGCTTTCAAC 243066 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| || ||||| || |||||||||||||| ||||| Sbjct 243067 CTCCAAAGTTATAGTCTTACCGGTCAGGGTTTTCACAAAAATCTGCAT 243114 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||||||| ||||||||||| | ||| ||||| || | ||||| || | Sbjct 166890 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGCA 166949 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || ||||| ||||||||||| | ||| ||||| | || Sbjct 166950 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 167009 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 167010 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAACTCTCTACC 167069 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| ||||||||||||||||| Sbjct 167070 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 167116 >seq4300 Length=903212 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | || | ||| | |||| || ||||| | |||||||||| | Sbjct 850584 CCACCACGAAGCCTGAGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCC 850525 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | ||| || |||||||| || | ||||| || || | ||| Sbjct 850524 AAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGA 850465 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 850464 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCCAC 850406 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || ||||| || ||||||||||| || ||||| ||| Sbjct 850405 TTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAATATCTGCATCTTC 850354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381250612684800