Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq5785 102 6e-17
seq4300 87.8 1e-12
>seq5785
Length=266748
Score = 102 bits (112), Expect = 6e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | |||||| |||| || |||||| || | ||||| || |
Sbjct 171452 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCT 171511
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || || | ||||||||| ||||| ||||||| ||| ||||| | ||
Sbjct 171512 AGAGTTCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGG 171571
Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060
| ||||| || || |||| || | ||||| || ||| |||||| ||| | | |
Sbjct 171572 ATGCCTTCCTTGTC-CTGAATCTTAGCCTTGACATTGTCAATTGTGTCAG-AGCTTTCAA 171629
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 171630 CCTCCAAAGTTATAGTTTTACCGGTAAGGGTTTTCACAAAAATCTGCAT 171678
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||||||||| ||||||||||| | ||| ||||| || | ||||| || |
Sbjct 165617 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGCA 165676
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | || || | || ||||| ||||||||||| | ||| ||||| | ||
Sbjct 165677 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 165736
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || |||| | || || | ||| ||||| | ||| ||
Sbjct 165737 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAACTCTCTACC 165796
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || |||||||| || ||||| |||||||||||||||||
Sbjct 165797 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 165843
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||||||||||| || |||||| || | ||||| || |
Sbjct 242888 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCA 242947
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || || | ||||||||||||||| || || | ||||||||| | ||
Sbjct 242948 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 243007
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| || || || || |||| | ||||| || | | |||||| ||| || ||
Sbjct 243008 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTC-AGAGCTTTCAAC 243066
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | |||||||| || ||||| || |||||||||||||| |||||
Sbjct 243067 CTCCAAAGTTATAGTCTTACCGGTCAGGGTTTTCACAAAAATCTGCAT 243114
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||||||||| ||||||||||| | ||| ||||| || | ||||| || |
Sbjct 166890 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGCA 166949
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | || || | || ||||| ||||||||||| | ||| ||||| | ||
Sbjct 166950 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 167009
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || || || || |||| | || || | ||| ||||| | ||| ||
Sbjct 167010 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAACTCTCTACC 167069
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || |||||||| || ||||| |||||||||||||||||
Sbjct 167070 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 167116
>seq4300
Length=903212
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || || | || | ||| | |||| || ||||| | |||||||||| |
Sbjct 850584 CCACCACGAAGCCTGAGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCC 850525
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || |||| || | ||| || |||||||| || | ||||| || || | |||
Sbjct 850524 AAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGA 850465
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| || || || || |||| | ||||| || | | |||||| ||| ||| ||
Sbjct 850464 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCCAC 850406
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113
|| | || || || || ||||| || ||||||||||| || ||||| |||
Sbjct 850405 TTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAATATCTGCATCTTC 850354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381250612684800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |