Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03]
25,600 sequences; 315,806,082 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq18882 170 3e-37
seq20901 140 4e-28
seq22035 102 1e-16
seq18338 91.5 2e-13
>seq18882
Length=869960
Score = 170 bits (188), Expect = 3e-37
Identities = 413/623 (66%), Gaps = 2/623 (0%)
Strand=Plus/Plus
Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113
|| ||| || || || ||||||||||| ||||||||||||| || || ||||| |
Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271
Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT- 42172
| || || | ||| ||||||| || |||||||| ||||||||||| | |||||| |
Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330
Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232
|| || ||||| || || || || ||||| || || | |||||| | || |
Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390
Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292
| | | ||||| ||| ||||| ||| |||||| || || || | ||||||
Sbjct 814391 GAGCCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCG 814450
Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352
||||| | ||||||| || ||||| | | ||| | || || || | | ||
Sbjct 814451 ATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGCAGC 814510
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
|||||||| || || ||||| |||||||| || || || |||||||| | |||
Sbjct 814511 GAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 814570
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
|||| ||||| || || || || | | || | || ||| || || |||||
Sbjct 814571 TCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCGTCG 814630
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532
||| || || || || | || || | | || | || ||||| | ||||
Sbjct 814631 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 814690
Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592
| ||| | || ||||| || | ||| ||||| || | |||||||| || |||||
Sbjct 814691 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 814750
Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652
|| || || ||||| | ||| || | | || ||||| ||||| ||| ||||| ||
Sbjct 814751 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGATCG 814810
Query 42653 GGATTTGGTGCAAGGATCGGTTC 42675
|||||||| || || | ||| ||
Sbjct 814811 GGATTTGGGGCTAGAAGCGGCTC 814833
>seq20901
Length=225483
Score = 140 bits (154), Expect = 4e-28
Identities = 390/589 (66%), Gaps = 12/589 (2%)
Strand=Plus/Plus
Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116
||| ||| || |||||||||||||| || || || |||| |||| ||||| || |
Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665
Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175
| || || || ||||||| || |||||||| | ||||||||| | |||| | | ||
Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 70724
Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 42232
|| || || || ||||| || ||||| || || |||||||| | || | | |
Sbjct 70725 GAGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 70784
Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292
| ||| ||||| ||| | |||||||||||||| | || || |||| ||||||
Sbjct 70785 CCGTCG---ATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCA 70841
Query 42293 ATGGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATATGTATCGATCAAAA 42350
| ||| ||| | | | ||||| | | | ||||| | || || || | | |
Sbjct 70842 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGA 70899
Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410
| |||||||| || || ||||| || ||||| || || || |||||||| | |
Sbjct 70900 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 70959
Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470
|||||| || || |||||| | || | |||| | |||||| || ||||| |
Sbjct 70960 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCAT 71019
Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530
| ||| || || || || | || || | || || | ||| ||||| | ||||
Sbjct 71020 CCGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGG 71079
Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590
| ||| | ||| || | || | || || || || ||||||||||||| ||||
Sbjct 71080 ATTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTT 71139
Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639
| || || || ||||| | |||||| || | || || ||||| || ||
Sbjct 71140 CGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188
>seq22035
Length=61329
Score = 102 bits (112), Expect = 1e-16
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477
||||| |||||||| | || ||||| || || ||||||||| || ||||| | || |
Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921
Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536
|| || | ||||| || || || || | ||| || | || || || || | ||| ||
Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAGGATTTTTCCA 72595
|||||| ||||||||||| || | ||| | || | ||||| | |||||| | ||||
Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||||| || |||||||| | || ||| || || ||||| |||||
Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754
Score = 93.3 bits (102), Expect = 6e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| ||||| | || | || || | |||| | || | || |||||| | |||||||
Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286
Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
|| |||| ||||| || ||| || ||||| ||||| | |||||||| ||| || |||
Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGA-ATATAACTTCCTGTCGCACGAATGTTGTGAACTGA 17227
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| || || || || ||| ||| | || || || || |||||||| ||
Sbjct 17226 GACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATAT 17167
Query 72357 GCCCTCTATACTATCATCCATCATG 72381
|| || ||||||||||| |||||
Sbjct 17166 TCCTTCAATACTATCATCTTTCATG 17142
>seq18338
Length=6336
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|||||| |||||||| | |||||||| || || || |||||| ||| |||| | ||
Sbjct 1927 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1868
Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535
||| || | |||||| || || ||||| | ||| || ||||| | | || | ||| |
Sbjct 1867 GTATGTTTTAATAGCGGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1809
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
||||||||||||| ||||| || | ||| | | || || | |||||| | || |
Sbjct 1808 ACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 1749
Query 72596 AAGTTTTAAAACCAAAATA 72614
||||| || ||||| ||
Sbjct 1748 GGGTTTTGAAGCCAAAGTA 1730
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||||||||| | || | || || | |||| | || | || |||||| | ||| |||
Sbjct 2256 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 2197
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
||||||| || || || || ||||| |||||| | |||||||| ||| || ||
Sbjct 2196 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGAG 2137
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| ||| || || || || ||| ||| | || || || || || ||||||||
Sbjct 2136 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 2077
Query 72358 CCCTCTATACTATCATCCATCAT 72380
|| || ||||||||||| ||||
Sbjct 2076 CCTTCAATACTATCATCTTTCAT 2054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670924435456000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |