Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18882 170 3e-37 seq20901 140 4e-28 seq22035 102 1e-16 seq18338 91.5 2e-13 >seq18882 Length=869960 Score = 170 bits (188), Expect = 3e-37 Identities = 413/623 (66%), Gaps = 2/623 (0%) Strand=Plus/Plus Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 || ||| || || || ||||||||||| ||||||||||||| || || ||||| | Sbjct 814212 TATACAACAGGCACGCAAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTG 814271 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT- 42172 | || || | ||| ||||||| || |||||||| ||||||||||| | |||||| | Sbjct 814272 AGAATGTTAATCCCGGCATTAACCCTCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTC 814330 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || || ||||| || || || || ||||| || || | |||||| | || | Sbjct 814331 CCTGAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCGGCGAAAGTCTCC 814390 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | | | ||||| ||| ||||| ||| |||||| || || || | |||||| Sbjct 814391 GAGCCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTTTCG 814450 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| | ||||||| || ||||| | | ||| | || || || | | || Sbjct 814451 ATGGCGTGAAAGAGACGATTCTTTTCGTCGGAGTTTTTGATGTAAGTTTCTAGAAGCAGC 814510 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || ||||| |||||||| || || || |||||||| | ||| Sbjct 814511 GAGTACATTTCGGAGTGGATGTTCTCAATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 814570 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| ||||| || || || || | | || | || ||| || || ||||| Sbjct 814571 TCGGCGACCTGGACCTCCGTCATGAACCTGCCGGCGAGGTTCTCGAGGACGATGCCGTCG 814630 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||| || || || || | || || | | || | || ||||| | |||| Sbjct 814631 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 814690 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| | || ||||| || | ||| ||||| || | |||||||| || ||||| Sbjct 814691 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 814750 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 || || || ||||| | ||| || | | || ||||| ||||| ||| ||||| || Sbjct 814751 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATACAAAATCGATCG 814810 Query 42653 GGATTTGGTGCAAGGATCGGTTC 42675 |||||||| || || | ||| || Sbjct 814811 GGATTTGGGGCTAGAAGCGGCTC 814833 >seq20901 Length=225483 Score = 140 bits (154), Expect = 4e-28 Identities = 390/589 (66%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 70606 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCGTCTCGCGAGATTAGCTCGTTTGAGA 70665 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || || || ||||||| || |||||||| | ||||||||| | |||| | | || Sbjct 70666 AGGTTAGCCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCC 70724 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 42232 || || || || ||||| || ||||| || || |||||||| | || | | | Sbjct 70725 GAGAAAAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 70784 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| ||| | |||||||||||||| | || || |||| |||||| Sbjct 70785 CCGTCG---ATCCAATTTAGGGCCCAATCGGCCTTTCTGGCAACGCACGGCACCGTTTCA 70841 Query 42293 ATGGCATTAAAGAGATAGtttttttCAT--TACTATCTTTAACATATGTATCGATCAAAA 42350 | ||| ||| | | | ||||| | | | ||||| | || || || | | | Sbjct 70842 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGT-TCTTT-ATGTACGTTTCTAGAAGGA 70899 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 | |||||||| || || ||||| || ||||| || || || |||||||| | | Sbjct 70900 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 70959 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 |||||| || || |||||| | || | |||| | |||||| || ||||| | Sbjct 70960 CCTCGGAGACTTGGACTTCTTTCATGAACCTGGCAGCGAGGTTTTCGAGGACGATTCCAT 71019 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 | ||| || || || || | || || | || || | ||| ||||| | |||| Sbjct 71020 CCGAGGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAGTGTTTCTCGTCGGCGGTTAGGG 71079 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | ||| | ||| || | || | || || || || ||||||||||||| |||| Sbjct 71080 ATTCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTT 71139 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | || || || ||||| | |||||| || | || || ||||| || || Sbjct 71140 CGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 71188 >seq22035 Length=61329 Score = 102 bits (112), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | || ||||| || || ||||||||| || ||||| | || | Sbjct 16980 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 16921 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||||| || || || || | ||| || | || || || || | ||| || Sbjct 16920 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGCAACCCAACAGCAACCCTCATCAA 16862 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAGGATTTTTCCA 72595 |||||| ||||||||||| || | ||| | || | ||||| | |||||| | |||| Sbjct 16861 CATATGTTGAGGTCTTTCTAC-AACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 16803 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || |||||||| | || ||| || || ||||| ||||| Sbjct 16802 GGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCGATCGTAGATAAT 16754 Score = 93.3 bits (102), Expect = 6e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| ||||| | || | || || | |||| | || | || |||||| | ||||||| Sbjct 17345 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACGCGCAGCATTGGCACAATACCA 17286 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 || |||| ||||| || ||| || ||||| ||||| | |||||||| ||| || ||| Sbjct 17285 TTAGATGTCCCATTTGTTCCCCGA-ATATAACTTCCTGTCGCACGAATGTTGTGAACTGA 17227 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 17226 GACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATAT 17167 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 17166 TCCTTCAATACTATCATCTTTCATG 17142 >seq18338 Length=6336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 1927 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1868 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | |||||| || || ||||| | ||| || ||||| | | || | ||| | Sbjct 1867 GTATGTTTTAATAGCGGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1809 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||||||| ||||| || | ||| | | || || | |||||| | || | Sbjct 1808 ACATATGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 1749 Query 72596 AAGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 1748 GGGTTTTGAAGCCAAAGTA 1730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 2256 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 2197 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| || || || || ||||| |||||| | |||||||| ||| || || Sbjct 2196 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACCGAG 2137 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 2136 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 2077 Query 72358 CCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 2076 CCTTCAATACTATCATCTTTCAT 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670924435456000