Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4300 96.9 4e-15 seq5785 86.0 6e-12 >seq4300 Length=903212 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| ||||||||||| || || Sbjct 755641 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 755582 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| ||||| || || || ||||| || || || Sbjct 755581 GCGAAGATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 755522 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | || |||||||| | ||| Sbjct 755521 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATTGTTTTGCCGGTTAGGGTT 755462 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 755461 TTCACGAAGATCTGCATA 755444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 818132 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGTTGCTTTCCG 818073 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || ||||| ||||| || || || Sbjct 818072 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTC 818013 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||| | ||| Sbjct 818012 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 817953 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 817952 TTGACGAAGATCTGCAT 817936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 850554 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 850495 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || || || || || || ||||| || || || Sbjct 850494 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 850435 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 850434 ACGTTGTCGATGGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 850375 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 850374 TTCACAAATATCTGCAT 850358 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || | ||||| || || || || || ||||||||||| | || || Sbjct 850801 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 850742 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || || ||| ||||||| || |||||||| || || || ||||| || Sbjct 850741 ATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCTTCCTT 850682 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 850681 GTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 850622 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| ||||| ||||| || ||||| Sbjct 850621 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 850586 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||||||||| || |||| | ||| ||||| || || || Sbjct 191513 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 191454 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| || ||||| || || || || ||||| ||||| || || || Sbjct 191453 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTG 191394 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | |||||||||||||| ||| Sbjct 191393 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 191334 Query 143168 TTTACGAATATTTGCAT 143184 ||||| || || ||||| Sbjct 191333 TTTACAAAGATCTGCAT 191317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || || || || ||||||||||||||| Sbjct 740047 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 739988 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || |||||| |||| || | || || || || || Sbjct 739987 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGCGG 739928 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || |||| | || | ||||| | | || || Sbjct 739927 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCGAC 739868 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || |||||||| | ||||| ||||| || |||||| Sbjct 739867 TTCGAGAGTAATAGTTTTGCCGGTAAGAGTTTTCACGAAGATCTGCATA 739819 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||||||||| || |||| ||||||||||| || || Sbjct 817904 GTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 817845 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| ||||| || || || ||||| || || || Sbjct 817844 GCGAAGATAAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 817785 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 817784 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 817725 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 817724 TTCACGAAGATCTGCATA 817707 >seq5785 Length=266748 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||||| || ||||| || || |||||||| || | |||| || | || || Sbjct 243134 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGTCCA-TCCTC 243192 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||||||| |||| || | |||||| || || || || ||||| || || Sbjct 243193 TAGTTGTTTACCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 243252 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | || | ||||| | | ||| || |||| || | ||||| Sbjct 243253 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTT 243312 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || ||||| || || |||||| Sbjct 243313 TCCAGTGAGGGTCTTTACAAAGATCTGCATA 243343 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| |||||||||||| |||| || | |||||||| || || || ||||| ||| Sbjct 243644 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTG 243703 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 243704 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 243763 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| || || |||||||| Sbjct 243764 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 243798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506852155392000