Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atalantia_20buxifolia_20[genbank_20GCA_5F002013935.1_202017-03-03] 25,600 sequences; 315,806,082 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq23635 96.9 3e-15 seq3274 91.5 1e-13 seq5785 84.2 2e-11 >seq23635 Length=3246295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| | |||| ||| | || |||||||||||||| || ||||| | Sbjct 165767 TTCCTCCCCTCAGCCTCAGGACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAATCTG 165708 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || |||| ||||||||| ||| |||| | ||||||||||||| | Sbjct 165707 CAAGCGTTCTGCCATCTTCCAACTGTTTACCAGCAAAAATCAATCTCTGCTGATCCGGAG 165648 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 165647 GAATGCCTTCCTTGTC 165632 >seq3274 Length=969234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||| ||||||||||| ||||||||||| |||| || | ||||||| Sbjct 910099 CACGAGGTGAAGCGTCGACTCCTTTTGGATATTGTAATCAGCCAAGGTGCGGCCGTCCTC 910040 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || || | || || |||||||| ||| || | || || ||||| Sbjct 910039 GAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 909980 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| | ||| ||||| ||||||||| || Sbjct 909979 GATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTAATGGTCTT 909920 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||| ||||| || || || |||||||| Sbjct 909919 GCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 909887 >seq5785 Length=266748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| ||||| ||||| || || | || | || || Sbjct 166318 CACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCATCTTC 166377 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| ||||||||||| || || | |||||| || || Sbjct 166378 TAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTG 166437 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||||| | ||| ||| | ||| || ||||| Sbjct 166438 AATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTT 166497 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || | |||||| ||||| || |||||| Sbjct 166498 ACCAGTGAGAGTTTTCACAAAGATCTGCATT 166528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| ||||| ||||| || || | || | || || Sbjct 167591 CACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGACCATCTTC 167650 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| ||||||||||| || || | |||||| || || Sbjct 167651 TAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTG 167710 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||||| | ||| ||| | ||| || ||||| Sbjct 167711 AATTTTAGCCTTGACATTGTCAATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTT 167770 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || | |||||| ||||| || |||||| Sbjct 167771 ACCAGTGAGAGTTTTCACAAAGATCTGCATT 167801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414443453286400